View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13784_low_1 (Length: 449)
Name: NF13784_low_1
Description: NF13784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13784_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 43978439 - 43978136
Alignment:
| Q |
1 |
taagaaaatagaagtgatagaatgtaactatatgtgttggtgttatattaacgtcaacaccattgtgcccaatgtcaaacatcaaacatgctttaaattt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43978439 |
taagaaaacagaagtgatagaatgtaactatatgtgttggtgttgtgttaacgtcaacaccattgtgcccaatgtcaaacatcaaacatgctttaaattt |
43978340 |
T |
|
| Q |
101 |
gatattggtgctacttaacataacaccgcattctttctcaatatttttatttggtcattttgatctaaagagaatgatcaatctagtgtgacatgagtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43978339 |
gatattggtgctacttaacataacaccgcattctttctcaatatttttatttggtcattttgatctaaagagaatgatcaacctagtgtgacatgagtga |
43978240 |
T |
|
| Q |
201 |
taaatatttgaatgcttcaatcttgacttatatgtggagagagatcaattctttaaatgagtttgagttagagtttgcaa------gcagggataatcta |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43978239 |
taaatatttgaatgcttcaatcttgacttatatgtggagagagatcaattctttaaatgagtttgagttagagtttgcaactgcatgcagggataatcta |
43978140 |
T |
|
| Q |
295 |
attt |
298 |
Q |
| |
|
|||| |
|
|
| T |
43978139 |
attt |
43978136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 283 - 434
Target Start/End: Complemental strand, 43978004 - 43977853
Alignment:
| Q |
283 |
agggataatctaatttgacatcaagattgtagggnnnnnnntgaaagaattaatttaacacgctttagaatatcaccatacaattttatttttgctaata |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43978004 |
agggataatctaatttgacatcaagattgtagggaaaaaaatgaaagaattaatttaacacgctttagaatatcaccatacaattttatttttgctaata |
43977905 |
T |
|
| Q |
383 |
tatggaatgttattttatttgcaggaaatgtcatttctttttgtttattcat |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43977904 |
tatggaatgttattttatttgcaggaaatgccatttctttttgtttattcat |
43977853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 7422180 - 7422220
Alignment:
| Q |
3 |
agaaaatagaagtgatagaatgtaactatatgtgttggtgt |
43 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
7422180 |
agaaaatagaagtgattgaatgtaattatatgtgttggtgt |
7422220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28735856 - 28735820
Alignment:
| Q |
1 |
taagaaaatagaagtgatagaatgtaactatatgtgt |
37 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
28735856 |
taagaaaatagaagtgattgaatgtaattatatgtgt |
28735820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University