View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13785_low_3 (Length: 377)
Name: NF13785_low_3
Description: NF13785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13785_low_3 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 41381658 - 41381482
Alignment:
| Q |
1 |
tatctttgcctacatggttgttgctttgtgctactttcctgttgctgttatcggttattatgtgtttggcaatgaggttaaagataatatcctcatgtct |
100 |
Q |
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| T |
41381658 |
tatctttgcctacatggttgttgctttgtgctactttcctgttgctattatcggttattatgtgtttggcaatgaggttaaagataatatcctcatgtct |
41381559 |
T |
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| Q |
101 |
ttggaaaaaccagcttggcttattgcaatggctaacttttttgtggttttacatgtcattggaagctatcaggtaaa |
177 |
Q |
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| T |
41381558 |
ttggaaaaaccagcttggcttattgcaatggctaacttttttgtggttttacatgtcattggaagctatcaggtaaa |
41381482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 41381418 - 41381309
Alignment:
| Q |
241 |
gatgggatgtcatgatcaaatttagcgaaattttgaagtaattcttaaaatttaaaagtgtcgatctcatttcacgaca--atttagtctttgaaaatat |
338 |
Q |
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| T |
41381418 |
gatgggatgtcatgatcaaatttagcgaaattttgaagtaattcttaaaatttaaaagtgtcgatctcatttcacgacaatatttagtctttgaaaatat |
41381319 |
T |
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| Q |
339 |
attttcataa |
348 |
Q |
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|||||||||| |
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| T |
41381318 |
attttcataa |
41381309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 7971216 - 7971045
Alignment:
| Q |
6 |
ttgcctacatggttgttgctttgtgctactttcctgttgctgttatcggttattatgtgtttggcaatgaggttaaagataatatcctcatgtctttgga |
105 |
Q |
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| T |
7971216 |
ttgcatacattgttgttgctttgtgctactttcctgttgctcttatcggttattggatatttggcaatggggttaaggataatatcctcgtgtctttgga |
7971117 |
T |
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| Q |
106 |
aaaaccagcttggcttattgcaatggctaacttttttgtggttttacatgtcattggaagctatcaggtaaa |
177 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |
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| T |
7971116 |
aaacccagcttggcttattgcaatggctaacttttttgtggttttgcatgtgattggaagctaccaggtaaa |
7971045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 8042497 - 8042668
Alignment:
| Q |
6 |
ttgcctacatggttgttgctttgtgctactttcctgttgctgttatcggttattatgtgtttggcaatgaggttaaagataatatcctcatgtctttgga |
105 |
Q |
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| T |
8042497 |
ttgcctacattattgttgctttgtgctacttccctgttgctattatcggttattggatatttggcaatggggttaaggataatatcctcgtgtctttgga |
8042596 |
T |
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| Q |
106 |
aaaaccagcttggcttattgcaatggctaacttttttgtggttttacatgtcattggaagctatcaggtaaa |
177 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |
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| T |
8042597 |
aaacccagcttggcttattgcaatggctaacttttttgtggttttgcatgtgattggaagttatcaggtaaa |
8042668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 8032593 - 8032764
Alignment:
| Q |
6 |
ttgcctacatggttgttgctttgtgctactttcctgttgctgttatcggttattatgtgtttggcaatgaggttaaagataatatcctcatgtctttgga |
105 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||| ||||||| |||||||| ||||| ||||| |||||| |||| || |||||||| |
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| T |
8032593 |
ttgcctacattgttgttgctttgtgctactttcctgttgctattattggttattgggtgtttggtaatgaagttaaggataatgtcctaatctctttgga |
8032692 |
T |
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| Q |
106 |
aaaaccagcttggcttattgcaatggctaacttttttgtggttttacatgtcattggaagctatcaggtaaa |
177 |
Q |
| |
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| T |
8032693 |
aaaaccagtttggctcatcgcaatatctaacctatttgtagttttacatgtaattggaagctatcaggtaaa |
8032764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 7978149 - 7977978
Alignment:
| Q |
6 |
ttgcctacatggttgttgctttgtgctactttcctgttgctgttatcggttattatgtgtttggcaatgaggttaaagataatatcctcatgtctttgga |
105 |
Q |
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|||| ||||| |||||||||||||| ||||| ||||||||| |||| ||||| | | ||||| ||||||||| | | | | |||||||| ||||| | |
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| T |
7978149 |
ttgcatacattgttgttgctttgtgttacttccctgttgctcttattggttactggatatttggaaatgaggttgatggtgacatcctcatatctttaca |
7978050 |
T |
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| Q |
106 |
aaaaccagcttggcttattgcaatggctaacttttttgtggttttacatgtcattggaagctatcaggtaaa |
177 |
Q |
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| T |
7978049 |
gaaacctgcatggcttattgcaacagctaacatgtttgttgttattcatgtgattggaagctatcaggtaaa |
7977978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 7970967 - 7970903
Alignment:
| Q |
249 |
gtcatgatcaaatttagcgaaattttgaagtaattcttaaaatttaaaagtgtcgatctcatttc |
313 |
Q |
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| T |
7970967 |
gtcatgatcaaatttaacgaaatttcaaagtaattcttaaaatttaaatgtatcgatctcatttc |
7970903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 2514 - 2343
Alignment:
| Q |
6 |
ttgcctacatggttgttgctttgtgctactttcctgttgctgttatcggttattatgtgtttggcaatgaggttaaagataatatcctcatgtctttgga |
105 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||| | || ||||||| ||||||||||| | ||||| |||||| ||||||| |||||||| |
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| T |
2514 |
ttgcctacattgttgttgctgtgtgctactttcctgttgctataattggttattggatgtttggcaatcaagttaaggataatgtcctcatctctttgga |
2415 |
T |
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| Q |
106 |
aaaaccagcttggcttattgcaatggctaacttttttgtggttttacatgtcattggaagctatcaggtaaa |
177 |
Q |
| |
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|||||| |||||||| |||||||| ||||| | ||||| ||||||||||| |||||||||||||||||||| |
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| T |
2414 |
aaaacctgcttggctcattgcaatatctaacctatttgttgttttacatgtaattggaagctatcaggtaaa |
2343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 14198098 - 14197929
Alignment:
| Q |
8 |
gcctacatggttgttgctttgtgctactttcctgttgctgttatcggttattatgtgtttggcaatgaggttaaagataatatcctcatgtctttggaaa |
107 |
Q |
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| T |
14198098 |
gcctatatagttgtagctttgtgctactttccagttgctctcattggttattggatgtttggaaatagtgttgatgacaacattctcatgactttagaga |
14197999 |
T |
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| Q |
108 |
aaccagcttggcttattgcaatggctaacttttttgtggttttacatgtcattggaagctatcaggtaaa |
177 |
Q |
| |
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||||| ||||||||||||||||| ||| | ||||| ||| | ||||| ||||||||||| |||||||| |
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| T |
14197998 |
aaccaaactggcttattgcaatggcaaacatgtttgttgttatccatgttattggaagctaccaggtaaa |
14197929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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