View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13785_low_4 (Length: 311)
Name: NF13785_low_4
Description: NF13785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13785_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 25 - 303
Target Start/End: Original strand, 35085421 - 35085699
Alignment:
| Q |
25 |
cgatgaaaatcgcatgaattttacaataatgctacaacatgattaaagagagatagagatacttgagaaaagcagcttatcgtacctgtttctgtttgtg |
124 |
Q |
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| T |
35085421 |
cgatgaaaatcgcatgaattttacaataatgctacaacatgattaaagagagatagagatacttgagaaaagcagcttatcgtacctgtttctgtttgtg |
35085520 |
T |
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| Q |
125 |
atgatgaacgacagcttcgctaggtttggtttggatgaaaacaataccgtgactgtgatgatggggagttatagatttatttatagtctccagaatttct |
224 |
Q |
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| T |
35085521 |
atgatgaacgacagcttcgctaggtttggtttggatgaaaacaataccgtgactgtgatgatggggagatatagatttatttatagtctccagaatttct |
35085620 |
T |
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| Q |
225 |
tgtttattctaactgggcctccttttgtgtttgcttttcaccacgccttttgtgatatatatagctctcctatcctatg |
303 |
Q |
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| T |
35085621 |
tgtttattctaactgggcctccttttgtgtttgcttttcaccacgccttttgtgatatatatagctctcctatcctatg |
35085699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 35100753 - 35100889
Alignment:
| Q |
70 |
aagagagata-gagatacttgagaaaagcagcttatcgtacctgtttctgtttgtgatgatgaacgacagcttcgctaggtttggtttggatgaaaacaa |
168 |
Q |
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| T |
35100753 |
aagagagataagagatacttgagaaaagcagcttatcgtacctgtttctgtttg--atgatgaacgacgtcttgact-----tggtttggatgaaaacaa |
35100845 |
T |
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| Q |
169 |
taccgtgactgtgatgatggggagttatagatttatttatagtc |
212 |
Q |
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| T |
35100846 |
taccgtgactgtgatgatggggagttatagatttatttatagtc |
35100889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 35074662 - 35074735
Alignment:
| Q |
151 |
tggtttggatgaaaacaata---ccgtgactgtgatgatggggagttatagatttatttatagtctccagaatt |
221 |
Q |
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| T |
35074662 |
tggtttggatgaaaacaatattaccgtgactctgatgatggggatttatagatttatttatagtcgccacaatt |
35074735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 191
Target Start/End: Complemental strand, 42795396 - 42795274
Alignment:
| Q |
70 |
aagagagatagagatacttgagaaa----agcagcttatcgtacctgtttctgtttgtgatgatgaacgacagcttcgctaggtttggtttggatgaaa- |
164 |
Q |
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| T |
42795396 |
aagagagatagagataattgataaagtaaagtagcttatcgcacctgtttctgtttgtgacgatgaacgacggcttagc-----ttggtttggatgaaaa |
42795302 |
T |
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| Q |
165 |
-acaataccgtgactgtgatgatgggga |
191 |
Q |
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| T |
42795301 |
tacaatactgtgactgtgatgattggga |
42795274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 35074018 - 35074071
Alignment:
| Q |
70 |
aagagagata-gagatacttgagaaaagcagcttatcgtacctgtttctgtttg |
122 |
Q |
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| T |
35074018 |
aagagagataagagatacttgagaaaagcagcttattgtacctgtttctgtttg |
35074071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 35100691 - 35100728
Alignment:
| Q |
30 |
aaaatcgcatgaattttacaataatgctacaacatgat |
67 |
Q |
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| T |
35100691 |
aaaatcgcatgaattttacaataatgctacaacatgat |
35100728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 141
Target Start/End: Complemental strand, 43026795 - 43026760
Alignment:
| Q |
106 |
gtacctgtttctgtttgtgatgatgaacgacagctt |
141 |
Q |
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| T |
43026795 |
gtacctgtttctgtttgtgatgatgaacgacggctt |
43026760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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