View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13786_high_2 (Length: 519)
Name: NF13786_high_2
Description: NF13786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13786_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 17 - 501
Target Start/End: Original strand, 3133703 - 3134187
Alignment:
| Q |
17 |
ttatcattcagtgtttcaaatttcacataattaaatccttttatcatcatgtgtgtaagcttatttgtccnnnnnnnnnggtgacagaactagtcaacaa |
116 |
Q |
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| T |
3133703 |
ttatcattcagtgtttcaaatttcacataattaaatccttttatcatcatgtgtgtaagcttatttgtccaaaaaaaaaggtgacagaactagtcaacaa |
3133802 |
T |
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| Q |
117 |
aattacaaaactatgtatataactcaataaaatgtagcatactttaaccaatcactttaatgtctacattttctgtttataatatacattaacaaaccac |
216 |
Q |
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| T |
3133803 |
aattacaaaactatgtatataactcaataaaatgtagcatactttaaccaatcactttaatgtctacattttctgtttataatatacattaacaaaccac |
3133902 |
T |
|
| Q |
217 |
atataacaggtagcatgttaaagaagagagaaacagaaacaaaaaatctcggtgaaatattgtaacacaatttctatggcaagtaatttacaacacattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3133903 |
atataacaggtagcatgttaaagaagagagaaacagaaacaaaaaatctcggtgaaatattgtaacacaatttctatggcaagtaatttacaacacattt |
3134002 |
T |
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| Q |
317 |
aaatacaagacattcatattgccttcagaaggtgcttcatcgtagagcagctcccattgctcctagtgcagcttccctcttcatctcagcagtcttacca |
416 |
Q |
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| T |
3134003 |
aaatacaagacattcatattgccttcagaaggtgcttcatcgtagagcagcccccattgctcccagtgcagcttccctcttcatctcagcagtcttacca |
3134102 |
T |
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| Q |
417 |
ccgccacggaagtacatatatacttgctgtatgcgacaaaagcaaagaagttaacaggttacaggtactttttgtttgtgcgcat |
501 |
Q |
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| T |
3134103 |
ccgccacggaagtacatatatacttgctgtatgcgacaagagcaaagaagttaacaggttacaggtactttttggttgtgtgcat |
3134187 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 448
Target Start/End: Complemental strand, 35890064 - 35890012
Alignment:
| Q |
396 |
ttcatctcagcagtcttaccaccgccacggaagtacatatatacttgctgtat |
448 |
Q |
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| T |
35890064 |
ttcatctcagcagccttaccacttccgcggaagtacatgtatacttgctgtat |
35890012 |
T |
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