View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13786_low_11 (Length: 274)
Name: NF13786_low_11
Description: NF13786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13786_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 70 - 256
Target Start/End: Original strand, 4913828 - 4914016
Alignment:
| Q |
70 |
tcaaagagagatagatattcaaagagacttgagactagtgatgaaagatggaatgtttccaaccaaatgagttgatgacaagtcaagtactctaaggttt |
169 |
Q |
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| T |
4913828 |
tcaaagagagatagatattcaa-gagacttgagactaatgatgaaagatggaatgtttccaacaaaattatttgaggataaatcaagtactctgaggctt |
4913926 |
T |
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| Q |
170 |
gtcaagttgctaaggcaatgatgaaaatgaccactcattgtat---agctgaggtcaagttccagcatattcttcattccacatagtcct |
256 |
Q |
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| T |
4913927 |
gtcaagtttctaaggcattgaggaaaataaccactcattccatttctgctgaggtcaagttcctgcagattcttcattccacataatcct |
4914016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 4913695 - 4913746
Alignment:
| Q |
19 |
aaaagtagggtgccatgatggactttctgtagtttccacatacaagttattt |
70 |
Q |
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| T |
4913695 |
aaaagtagggtgccatgatggactttcttcagtttccacatacaagttattt |
4913746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 249
Target Start/End: Original strand, 32746839 - 32747020
Alignment:
| Q |
70 |
tcaaagagagatagatattcaaagagacttgagactagtgatgaaagatggaatgtttccaaccaaatgagttgatgacaagtcaagtactctaaggttt |
169 |
Q |
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| T |
32746839 |
tcaaagagagatagatattcaa-gagacttgagactagtgatgaaagatggaatatttccaacaaaattattggaggataaatcaagtacttggaggttt |
32746937 |
T |
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| Q |
170 |
gtcaagttgctaaggcaatgatgaaaatgaccactcattgtat---agctgaggtcaagttccagcatattcttcattccaca |
249 |
Q |
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| T |
32746938 |
gtcaagttgctaaggcaatgtggaaaatcaccactcattctatttctgctgaggtcaagttcctgtaaattcttcatttcaca |
32747020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 2126792 - 2126835
Alignment:
| Q |
222 |
caagttccagcatattcttcattccacatagtcctatgctactc |
265 |
Q |
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| T |
2126792 |
caagttccagcatattcttcattccacatagtcctgtggtactc |
2126835 |
T |
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