View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13786_low_12 (Length: 274)
Name: NF13786_low_12
Description: NF13786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13786_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 40818949 - 40818691
Alignment:
| Q |
1 |
aattactagtactacacctttggattatgatcttgagtatattaagcaattaattagtagtaatagtggtagttgtaataatggttacttgagtattgat |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40818949 |
aattactagtacgacacctttggattatgatcttgagtatattaagcaattaattagtagtaatagtggtagttgtaataatggttacttgagtattgat |
40818850 |
T |
|
| Q |
101 |
gaaaacaagatggaggagaagactatgtagtattactgaactgatgagtggaagtgaaatcagaaagatatgtttcggtgagagaggtatggtgtatggt |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40818849 |
gaaaataagatggaggagaagactatgtactattactgaactgatgagtggaagtgaaatcagaaagatatgtttcagtgagagaggtatggtgtatggt |
40818750 |
T |
|
| Q |
201 |
agtgtggaagactcagaaaagacaatttaagctaattattatttttatgggattctgtg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40818749 |
agtgtggaagactcagaaaagacaatttaagctaattattatttttatgggattctgtg |
40818691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University