View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13786_low_14 (Length: 270)

Name: NF13786_low_14
Description: NF13786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13786_low_14
NF13786_low_14
[»] chr7 (2 HSPs)
chr7 (14-255)||(6953086-6953326)
chr7 (16-255)||(42810036-42810274)
[»] chr4 (2 HSPs)
chr4 (14-255)||(18184763-18185003)
chr4 (158-255)||(43073245-43073342)
[»] chr5 (3 HSPs)
chr5 (85-255)||(14749073-14749245)
chr5 (85-178)||(35457634-35457727)
chr5 (15-56)||(35457549-35457590)
[»] scaffold0002 (1 HSPs)
scaffold0002 (104-255)||(248761-248912)
[»] chr8 (1 HSPs)
chr8 (148-255)||(9976882-9976988)
[»] chr3 (1 HSPs)
chr3 (14-55)||(50531175-50531216)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 6953086 - 6953326
Alignment:
Q  14 caagtcaatcttcaaaaatttcattctaatatcaaacttatatnnnnnnnngcaggagaagtnnnnnnnnntgcagggtcatttgtctgcttggctagtc 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||        |||||||||||         ||||||||||| |||||||||||||||||    
T  6953086 caagtcaatcttcaaaaatttcattctaataccaaacttatataaaaaaaagcaggagaagtaaaaaaaa-tgcagggtcatctgtctgcttggctagtc 6953184  T
Q  114 aaacacggaatagttcatagatctttgggttttgattaccaaggaatagagactttacaaataaagcccgaggattggcattcgattgctgttattttat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6953185 aaacacggaatagttcatagatctttgggttttgattaccaaggaatagagactttacaaataaagcccgaggattggcattcgattgctgttattttat 6953284  T
Q  214 atgtatatggttacaattatctacgttcccaatgtgcctatg 255  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6953285 atgtatatggttacaattatctacgttcccaatgtgcctatg 6953326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 42810036 - 42810274
Alignment:
Q  16 agtcaatcttcaaaaatttcattctaatatcaaacttatatnnnnnnnngcaggagaagtnnnnnnnnntgcagggtcatttgtctgcttggctagtcaa 115  Q
    ||||||||||||||||||||||||||||| |||||||||||        |||||||||||         ||||||||||| ||||| |||||||||||||    
T  42810036 agtcaatcttcaaaaatttcattctaataccaaacttatataaaaaaaagcaggagaagtaaaaaaaa-tgcagggtcatctgtctacttggctagtcaa 42810134  T
Q  116 acacggaatagttcatagatctttgggttttgattaccaaggaatagagactttacaaataaagcccgaggattggcattcgattgctgttattttatat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  42810135 acacggaatagttcatagatctttgggttttgattaccaaggaatagagactttacaaataaagccagaggattggcattcaattgctgttattttatat 42810234  T
Q  216 gtatatggttacaattatctacgttcccaatgtgcctatg 255  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42810235 gtatatggttacaattatctacgttcccaatgtgcctatg 42810274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 18185003 - 18184763
Alignment:
Q  14 caagtcaatcttcaaaaatttcattctaatatcaaacttatatnnnnnnnngcaggagaagtnnnnnnnnntgcagggtcatttgtctgcttggctagtc 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||        |||||||||||         ||||||||||| |||||||||||||||||    
T  18185003 caagtcaatcttcaaaaatttcattctaataccaaacttatataaaaaaaagcaggagaagtaaaaaaaa-tgcagggtcatctgtctgcttggctagtc 18184905  T
Q  114 aaacacggaatagttcatagatctttgggttttgattaccaaggaatagagactttacaaataaagcccgaggattggcattcgattgctgttattttat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18184904 aaacacggaatagttcatagatctttgggttttgattaccaaggaatagagactttacaaataaagcccgaggattggcattcgattgctgttattttat 18184805  T
Q  214 atgtatatggttacaattatctacgttcccaatgtgcctatg 255  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18184804 atgtatatggttacaattatctacgttcccaatgtgcctatg 18184763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 43073245 - 43073342
Alignment:
Q  158 aatagagactttacaaataaagcccgaggattggcattcgattgctgttattttatatgtatatggttacaattatctacgttcccaatgtgcctatg 255  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43073245 aatagagactttacatataaagcccgaggattggcattcggttgctgttattttatatgtatatggttacaattatctacgttcccaatgtgcctatg 43073342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 85 - 255
Target Start/End: Original strand, 14749073 - 14749245
Alignment:
Q  85 tgcagggtcatttgtctgcttggctagtcaaacacggaatagttcatagatctttgggttttgattaccaaggaatagagactttacaaataaagcccga 184  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  14749073 tgcaaggtaatttgtctgcttggctaatcaaacacggaatagtttacagatctttgggttttgattaccaaggaat--agactttacaaataaagcccga 14749170  T
Q  185 ggattggcattcgattgctgttatttta----tatgtatatggttacaattatctacgttcccaatgtgcctatg 255  Q
    |||||||||||| |||||||||||||||    |||||||||||||||||||| ||||||||||||||||||||||    
T  14749171 ggattggcattcaattgctgttattttatatgtatgtatatggttacaattacctacgttcccaatgtgcctatg 14749245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 35457634 - 35457727
Alignment:
Q  85 tgcagggtcatttgtctgcttggctagtcaaacacggaatagttcatagatctttgggttttgattaccaaggaatagagactttacaaataaa 178  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||| ||||||||||||    
T  35457634 tgcagggtaatttgtctgcgtggctagtcaaacacggaatagttcacatatctttgagttttgattactaaggaatagagattttacaaataaa 35457727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 35457549 - 35457590
Alignment:
Q  15 aagtcaatcttcaaaaatttcattctaatatcaaacttatat 56  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  35457549 aagtcaatcttcaaaaatttcattataataccaaacttatat 35457590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 104 - 255
Target Start/End: Complemental strand, 248912 - 248761
Alignment:
Q  104 ttggctagtcaaacacggaatagttcatagatctttgggttttgattaccaaggaatagagactttacaaataaagcccgaggattggcattcgattgct 203  Q
    ||||||||||||||| |   | ||||||||||||||||| |||||||||||||||||||||||||||||||||||  | | ||||||| |||| ||||||    
T  248912 ttggctagtcaaacatgaggtggttcatagatctttgggctttgattaccaaggaatagagactttacaaataaaagcaggggattgggattccattgct 248813  T
Q  204 gttattttatatgtatatggttacaattatctacgttcccaatgtgcctatg 255  Q
    || |||||||||||||||||||| |||||| |||| ||||||||||| ||||    
T  248812 gtcattttatatgtatatggttataattatttacgctcccaatgtgcttatg 248761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 148 - 255
Target Start/End: Original strand, 9976882 - 9976988
Alignment:
Q  148 attaccaaggaatagagactttacaaataaagcccgaggattggcattcgattgctgttattttatatgtatatggttacaattatctacgttcccaatg 247  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||||||||| |||| || | ||| |||||| |||||||||| || || |||||||    
T  9976882 attaccaaggaatagagacttcacaaataaagcctaaggattggcattcgattgttgtt-ttctgtatttatatgtttacaattatatatgtacccaatg 9976980  T
Q  248 tgcctatg 255  Q
    || |||||    
T  9976981 tgtctatg 9976988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 50531216 - 50531175
Alignment:
Q  14 caagtcaatcttcaaaaatttcattctaatatcaaacttata 55  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  50531216 caagtcaatcttcaaaaatttcattctaataccaaacttata 50531175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University