View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13786_low_16 (Length: 250)
Name: NF13786_low_16
Description: NF13786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13786_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 30553724 - 30553503
Alignment:
| Q |
13 |
aatatagagaccactttgaaaaataatatgaatgaattataaagatcaatttgacattttacattatacagaatttggaggaatttcaaattcttagatt |
112 |
Q |
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| T |
30553724 |
aatatagagaccactttgaaaaataatatgaatgaattataaagatcaatttgacattttacattatacaggatttggaggaatttcaaattcttagatt |
30553625 |
T |
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| Q |
113 |
tatggtatttgaaatttcctaaatttagctttaacaaggtgcttcataaaattcttttctattgaaattttttcaaatttaccatccaaccaataaaatt |
212 |
Q |
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| T |
30553624 |
tatgttatttgaaatttcctaaatttagctttaacaaggtgcttcataaaattcttttctattgaaattttttcaaatttaccatccaaccaataaaatt |
30553525 |
T |
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| Q |
213 |
tatattgaagaggttgaattat |
234 |
Q |
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| T |
30553524 |
tacattgaaaaggttgaattat |
30553503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 207
Target Start/End: Complemental strand, 5275042 - 5274925
Alignment:
| Q |
93 |
gaatttcaaattcttagattta---tggtatttgaaatttcctaaatttagctttaacaaggtgcttcataaaattcttttctattgaaattttttcaaa |
189 |
Q |
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||||||||||||||||| ||| || ||||||||||||| ||||||||||||| |||| | |||||||||| ||| |||| |||||| |||||| |
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| T |
5275042 |
gaatttcaaattcttagtttttaagtgatatttgaaatttcttaaatttagctttgacaaaataattcataaaatctctttatattaaaatttcttcaaa |
5274943 |
T |
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| Q |
190 |
tttaccatccaaccaata |
207 |
Q |
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| T |
5274942 |
tttatcatccaagcaata |
5274925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 3827514 - 3827546
Alignment:
| Q |
115 |
tggtatttgaaatttcctaaatttagctttaac |
147 |
Q |
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| T |
3827514 |
tggtatttgaaatttcttaaatttagctttaac |
3827546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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