View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13786_low_17 (Length: 249)
Name: NF13786_low_17
Description: NF13786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13786_low_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 29385844 - 29385610
Alignment:
| Q |
1 |
ctaacaaagccacatgttgtaaatggtttagccgaaatgatgtagtaatttgtattagctcgaagcttcttgcctgatgtgtcaatgacttgatcgggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29385844 |
ctaacaaagccacatgttgtaaatggtttagccggaatgatgtagtaatttgtatcagctcgaagcttcttgcccgatgtgtcaatgacttgatcgggtg |
29385745 |
T |
|
| Q |
101 |
aagcttcagctgatccaagtagtggttgcgaggacaatgcaaagagaaggagaaatgctagcattgtactcttcattgttgtgtgcttatgctttatttg |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29385744 |
aagcttcagctgatccaagtaatggttgcgaggacaatgcaaagagaaggagaaatgctagcattgtacccttcattgttgtgtgcttatgctttatttg |
29385645 |
T |
|
| Q |
201 |
ttaattttgtgtttgttttggtaatgaatgaggatat |
237 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29385644 |
ttaattt--tgtttgttttggtaatgaatgaggatat |
29385610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 29378521 - 29378392
Alignment:
| Q |
36 |
aatgatgtagtaatttgtattagctcgaagcttcttgcctgatgtgtcaatgacttgatcgggtgaagcttcagctgatccaagtagtggttgcgaggac |
135 |
Q |
| |
|
|||||||||||||| | || || |||||||||||| || ||| |||||| ||||||| | |||||| || || |||| ||| ||||||||| |||||| |
|
|
| T |
29378521 |
aatgatgtagtaatcggaatcagttcgaagcttcttccccgatatgtcaagcacttgattgagtgaagttttagatgatacaaatagtggttgtgaggac |
29378422 |
T |
|
| Q |
136 |
aatgcaaagagaaggagaaatgctagcatt |
165 |
Q |
| |
|
|| |||| ||||||||||| |||||||||| |
|
|
| T |
29378421 |
aaggcaaggagaaggagaagtgctagcatt |
29378392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 29339563 - 29339478
Alignment:
| Q |
43 |
tagtaatttgtattagctcgaagcttcttgcctgatgtgtcaatgacttgatcgggtgaagcttcagctgatccaagtagtggttg |
128 |
Q |
| |
|
|||||||| | || |||||| || ||||||||| ||||||||| ||||| || |||||||||||||| |||||| |||||||| |
|
|
| T |
29339563 |
tagtaattagcatcagctcggagtttcttgcctaatgtgtcaaccacttgttcatttgaagcttcagctgctccaagaagtggttg |
29339478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 29343356 - 29343441
Alignment:
| Q |
43 |
tagtaatttgtattagctcgaagcttcttgcctgatgtgtcaatgacttgatcgggtgaagcttcagctgatccaagtagtggttg |
128 |
Q |
| |
|
|||||||| | || |||||| || ||||||||| ||||||||| ||||| || |||||||||||||| |||||| |||||||| |
|
|
| T |
29343356 |
tagtaattagcatcagctcggagtttcttgcctaatgtgtcaaccacttgttcatttgaagcttcagctgctccaagaagtggttg |
29343441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University