View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13786_low_3 (Length: 490)
Name: NF13786_low_3
Description: NF13786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13786_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Complemental strand, 7143900 - 7143442
Alignment:
| Q |
18 |
cttttgagcacacaaagcgtcgtgatgtaattgatccgtcatttttagaacgaaacaattgaccgactcgaattccaaaacccatatatgctgcatgagc |
117 |
Q |
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| T |
7143900 |
cttttgagcacacaaagcgtcgtgatgtaattgatccgtcatttttagaacgaaacaattgaccgactcgaattccaaaacccatatatgctgcatgagc |
7143801 |
T |
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| Q |
118 |
atgataaaattggtaggcttcattaggggtactgaactcttgaccaacatatggttcgatcctggcttgtacttcaagttcttcttttctcatacgcttg |
217 |
Q |
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| T |
7143800 |
atgataaaattggtaggcttcattaggggtactgaactcttgaccaacatatggttcgatcctggcttgtacttcaagttcttcttttctcatacgcttg |
7143701 |
T |
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| Q |
218 |
aaattaataacgccaaagggagaaataggttcaccattccctacttcaagcattttcttcctcggcttgcgagtgacttcagtagaagactcaatagctg |
317 |
Q |
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| T |
7143700 |
aaattaataacgccaaagggagaaataggttcaccattccctacttcaagcattttcttcctcggcttgcgagtgacttcagtagaagactcaatagctg |
7143601 |
T |
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| Q |
318 |
cagaagccttcggctgcaatgttggagcgaaactttcactttcattttcaagattgtggttatgatccttatgaaaatgatcaacaacccactttccaga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7143600 |
cagaagccttcggctgcaatgttggagcgaaactttcactttcattttcaagattgtggttatgatccttatgaaaatgatcaacaacccactttccaga |
7143501 |
T |
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| Q |
418 |
atcatttaactgcacccttatgaacgccggacaaccagttcttgagctgagatgatgtc |
476 |
Q |
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| T |
7143500 |
atcatttaactgcacccttatgaacgccggacaaccagttcttgagctgagctgatgtc |
7143442 |
T |
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