View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13786_low_4 (Length: 461)

Name: NF13786_low_4
Description: NF13786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13786_low_4
NF13786_low_4
[»] chr5 (2 HSPs)
chr5 (17-443)||(2293673-2294100)
chr5 (17-84)||(17222850-17222917)
[»] chr6 (4 HSPs)
chr6 (339-443)||(34787420-34787524)
chr6 (15-155)||(25063541-25063681)
chr6 (17-139)||(12384145-12384267)
chr6 (17-155)||(13312186-13312324)
[»] chr7 (5 HSPs)
chr7 (18-142)||(13120731-13120856)
chr7 (15-82)||(28243352-28243419)
chr7 (69-118)||(28243314-28243364)
chr7 (106-140)||(28243293-28243327)
chr7 (36-155)||(3922380-3922500)
[»] chr1 (1 HSPs)
chr1 (17-155)||(17377858-17377997)
[»] chr4 (3 HSPs)
chr4 (15-155)||(898462-898604)
chr4 (15-103)||(12831783-12831870)
chr4 (15-116)||(23149471-23149573)
[»] chr2 (1 HSPs)
chr2 (36-81)||(17408697-17408742)


Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 443
Target Start/End: Complemental strand, 2294100 - 2293673
Alignment:
Q  17 gtgaaactataaaatggaaggggtgaactttcttttatatatcgaagttgtccggattacgtaatctggactgtatttcgtatttttccgattacgtaat 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2294100 gtgaaactataaaatgggaggggtgaactttcttttatatatcgaagttgtccagattacgtaatctggactgtatttcgtatttttccgattacgtaat 2294001  T
Q  117 ccgaaaggtatgttggtcatttttgctgggcgcgtgagtgtgggtggcataggttgtgaaaagtaataatctaaagaattaggtctctcgttaagtttga 216  Q
    || || |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2294000 ccaaagggtatgttggtcatttttgcagggcgcgtgagtgtgggtggcataggttgggaaaagtaataatctaaagaattaggtctctcgttaagtttga 2293901  T
Q  217 gtaaaagcccaattaacctttacatannnnnnnagcccaaaaacccatcaataaacctctttgaatcagatttacaccttcaacaaaaacacattcttct 316  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2293900 gtaaaagcccaattaacctttacatatttttttagcccaaaaacccatcaataaacctctttgaatcagatttacaccttcaacaaaaacacattcttct 2293801  T
Q  317 tcttttcctgtatcgtc-ttctaccctagccatgtcttcttccaaagatgcagacccaaccctaggttacctcactcgaaaagataccgaagtcaagctt 415  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2293800 tcttttcctgtatcgtctttctaccctagccatgtcttcttccaaagatgcagacccaaccctaggttacctcactcgaaaagataccgaagtcaagctt 2293701  T
Q  416 ccacgtccaactagggttaagaacaaaa 443  Q
    ||||||||||||||||||||||||||||    
T  2293700 ccacgtccaactagggttaagaacaaaa 2293673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 17222850 - 17222917
Alignment:
Q  17 gtgaaactataaaatggaaggggtgaactttcttttatatatcgaagttgtccggattacgtaatctg 84  Q
    |||||||| |||||||| |||||||||||| |||||||| || |||||||||||||||||||||||||    
T  17222850 gtgaaactgtaaaatgggaggggtgaacttccttttatacattgaagttgtccggattacgtaatctg 17222917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 339 - 443
Target Start/End: Original strand, 34787420 - 34787524
Alignment:
Q  339 ccctagccatgtcttcttccaaagatgcagacccaaccctaggttacctcactcgaaaagataccgaagtcaagcttccacgtccaactagggttaagaa 438  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||    
T  34787420 ccctagccatgtcttcttccaaagttgcagacccaaccctaggttacctcactcgaaaagacactgaagtaaaacttccacgtccaactagggttaagaa 34787519  T
Q  439 caaaa 443  Q
    |||||    
T  34787520 caaaa 34787524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 25063541 - 25063681
Alignment:
Q  15 ctgtgaaactataaaatggaaggggtgaactttcttttatatatcgaagttgtccggattacgtaatctggactgtatttcgt-atttttccgattacgt 113  Q
    |||||||||| |||||||| |||| ||||| | |||||||| |||||||||||||||||||||||||| ||| |||||| | | | ||||  ||||| ||    
T  25063541 ctgtgaaactgtaaaatgggaggg-tgaacgtccttttatacatcgaagttgtccggattacgtaatccggaatgtattacataagtttttggattatgt 25063639  T
Q  114 aatccgaaaggtatgttggtcatttttgctgggcgcgtgagt 155  Q
    ||||| || || |||||||||||||||||  |||||||||||    
T  25063640 aatccaaagggcatgttggtcatttttgcaaggcgcgtgagt 25063681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 12384267 - 12384145
Alignment:
Q  17 gtgaaactataaaatggaaggggtgaactttcttttatatatcgaagttgtccggattacgtaatctggactgtatttcgtatttttcc-gattacgtaa 115  Q
    |||||||| |||||||| |||| |||  |||||| || |||||||||| ||||||||||||||||| ||| |||||||| ||||||||| |||||||| |    
T  12384267 gtgaaactgtaaaatgggagggatgat-tttcttataaatatcgaagtagtccggattacgtaatccggaatgtatttcatatttttccggattacgtta 12384169  T
Q  116 tccgaaaggtatgttggtcatttt 139  Q
    || ||| || ||||||||||||||    
T  12384168 tctgaatggcatgttggtcatttt 12384145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 13312186 - 13312324
Alignment:
Q  17 gtgaaactataaaatggaaggggtgaactttcttttatatatcgaagttgtccggattacgtaatctggactgtatttcgtat-ttttccgattacgtaa 115  Q
    |||||||| |||||||| ||||| |||||| ||| |||||||| |||| ||| |||||||||||||  || || |||||||||  |||  |||| |||||    
T  13312186 gtgaaactgtaaaatgggaggggcgaacttccttatatatatcaaagtagtctggattacgtaatccagattgcatttcgtatcattttggatttcgtaa 13312285  T
Q  116 tccgaaaggtatgttggtcatttttgctgggcgcgtgagt 155  Q
    ||| || || || |||||| ||||||| || |||||||||    
T  13312286 tccaaagggcattttggtc-tttttgcaggacgcgtgagt 13312324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 13120856 - 13120731
Alignment:
Q  18 tgaaactataaaatggaaggggtgaactttcttttatatatcgaagttgtccggattacgtaatctggactgtatttcgtatttttcc-gattacgtaat 116  Q
    ||||||| |||||||| |||| |||||||||||||||||||||||||||||| |||||| ||| | ||| |||||||||||||||||| |||||||||||    
T  13120856 tgaaactgtaaaatgggagggatgaactttcttttatatatcgaagttgtccagattacataagccggaatgtatttcgtatttttccggattacgtaat 13120757  T
Q  117 ccgaaaggtatgttggtcatttttgc 142  Q
    ||||| || |||||||||||||||||    
T  13120756 ccgaagggcatgttggtcatttttgc 13120731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 28243419 - 28243352
Alignment:
Q  15 ctgtgaaactataaaatggaaggggtgaactttcttttatatatcgaagttgtccggattacgtaatc 82  Q
    |||||||||| |||||||| |||||||||||| |||||||||||||||||| || |||||||||||||    
T  28243419 ctgtgaaactgtaaaatgggaggggtgaacttccttttatatatcgaagttctctggattacgtaatc 28243352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 28243314 - 28243364
Alignment:
Q  69 cggattacgtaatctggactgtatttcgtatttttcc-gattacgtaatcc 118  Q
    |||||||||||||| ||| |||||||||||||||||| |||||||||||||    
T  28243314 cggattacgtaatccggaatgtatttcgtatttttccggattacgtaatcc 28243364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 28243327 - 28243293
Alignment:
Q  106 gattacgtaatccgaaaggtatgttggtcattttt 140  Q
    ||||||||||||||||||| |||||||||||||||    
T  28243327 gattacgtaatccgaaaggcatgttggtcattttt 28243293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 3922380 - 3922500
Alignment:
Q  36 ggggtgaactttcttttatatatcgaagttgtccggattacgtaatctggactgtatttc-gtatttttccgattacgtaatccgaaaggtatgttggtc 134  Q
    ||||||||||| ||||||||  ||||| ||||||| ||||||||||| ||||  |||||| || ||||   |||||| ||||| | | || ||||| |||    
T  3922380 ggggtgaacttacttttatacttcgaatttgtccgaattacgtaatccggacattatttcagttttttctggattacataatctggagggcatgtttgtc 3922479  T
Q  135 atttttgctgggcgcgtgagt 155  Q
    |||||||| ||| ||| ||||    
T  3922480 atttttgcagggagcgggagt 3922500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 17377997 - 17377858
Alignment:
Q  17 gtgaaactataaaatggaaggggtgaactttcttttatatatcgaagttgtccggattacgtaatctggactgtatttcgtatttttccg-attacgtaa 115  Q
    ||||||||||||||||| |||||||||||| ||| |||||| |||||  || | |||||||||||| ||| ||||||||||||||||||| ||||  |||    
T  17377997 gtgaaactataaaatgggaggggtgaacttccttatatataccgaagaagttcagattacgtaatccggaatgtatttcgtatttttccgaattatataa 17377898  T
Q  116 tccgaaaggtatgttggtcatttttgctgggcgcgtgagt 155  Q
    |||||| || || ||| |||||||||| | ||||||||||    
T  17377897 tccgaatggcatattgatcatttttgcagagcgcgtgagt 17377858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 898604 - 898462
Alignment:
Q  15 ctgtgaaactataaaatggaaggggtgaactttcttttatatatcgaagttgtccggattacgtaatctggactgtatttcgtatttttcc--gattacg 112  Q
    |||||||| | |||||||| |||||||||||| |||| ||||||| |||||||| | ||||||||||||| | | | ||  |||| ||| |  |||||||    
T  898604 ctgtgaaattgtaaaatgggaggggtgaacttcctttaatatatctaagttgtctgaattacgtaatctgtaatctgttatgtatgttttctagattacg 898505  T
Q  113 taatccgaaaggtatgttggtcatttttgctgggcgcgtgagt 155  Q
    ||||||||| || ||||||||||||||||| ||||| ||||||    
T  898504 taatccgaagggcatgttggtcatttttgcagggcgagtgagt 898462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 12831783 - 12831870
Alignment:
Q  15 ctgtgaaactataaaatggaaggggtgaactttcttttatatatcgaagttgtccggattacgtaatctggactgtatttcgtattttt 103  Q
    |||||||||| |||||||| ||||||||| || ||||| ||  ||||| ||||||||||||||||||| ||| |||||||||| |||||    
T  12831783 ctgtgaaactgtaaaatgggaggggtgaatttccttttctagttcgaa-ttgtccggattacgtaatccggaatgtatttcgttttttt 12831870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 23149471 - 23149573
Alignment:
Q  15 ctgtgaaactataaaatggaaggggtgaactttcttttatatatcgaagttgtccggattacgtaatctggactgtatttcgtatttttcc-gattacgt 113  Q
    |||| ||||| |||||||| ||||||||  |||||| |||||||| |||  || |||||||||||||| |   || ||||||||||||||| ||||||||    
T  23149471 ctgtaaaactttaaaatgggaggggtgatttttcttatatatatcaaagcagttcggattacgtaatccgagttgcatttcgtatttttcctgattacgt 23149570  T
Q  114 aat 116  Q
    |||    
T  23149571 aat 23149573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 17408742 - 17408697
Alignment:
Q  36 ggggtgaactttcttttatatatcgaagttgtccggattacgtaat 81  Q
    ||||||||||| ||||||||  ||||| ||||||||||||||||||    
T  17408742 ggggtgaacttccttttatacttcgaatttgtccggattacgtaat 17408697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University