View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13786_low_6 (Length: 367)
Name: NF13786_low_6
Description: NF13786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13786_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 38 - 367
Target Start/End: Original strand, 8623851 - 8624178
Alignment:
| Q |
38 |
atccattactatcatacatatatttatctggaaaatatatcctcttaaaacaaggttcaaattatagttgcattacaaacctaaatattgtggagaattt |
137 |
Q |
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| T |
8623851 |
atccattactatcatacatatatttatctggaaaatatatcctcttaaaacaaggttaaaattatagttgcattacaaacctaaatattgtggagaattt |
8623950 |
T |
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| Q |
138 |
ttatttaatgcttctaaaacaattttcgttgcacgatcttataaattttttaatgtgagtgatattttaaaggacttgtcataacatgcctaaagatttt |
237 |
Q |
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| T |
8623951 |
ttatttaatgcttctaaaacaattttcgttgcacgatcttataaattttttaatgtgagttatatttt-aaggacttgtcataacatgcctaaagatttt |
8624049 |
T |
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| Q |
238 |
aagaatgcttctatagatacttatagattactcatnnnnnnnnngtaaatgttgtttattagtaatattctaattgttgatttgcatatgcagggagaag |
337 |
Q |
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| T |
8624050 |
aagaatgcttctatagatactaatagattactcat-aaaaaaaagtaaatgttgtttattagtaatattctaattgttgatttgcatatgcagggagaag |
8624148 |
T |
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| Q |
338 |
tagtgcaagattggacagaaatggtaatat |
367 |
Q |
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| T |
8624149 |
tagtgcaagattggagagaaatggtaatat |
8624178 |
T |
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