View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13786_low_7 (Length: 314)
Name: NF13786_low_7
Description: NF13786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13786_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 21 - 300
Target Start/End: Original strand, 6494018 - 6494296
Alignment:
| Q |
21 |
gacattgtattcccacaggtacgccaaacttctaaatgttctggtccctgggagggagattcctcccgatgcacatgaccgagtgtcagaaatattatcc |
120 |
Q |
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| T |
6494018 |
gacattatattcccacaggtacgccaaacttctaaatgttctagtccctgggagggagattcctcccgatgcacatgaccgagtgtctgaaatattatcc |
6494117 |
T |
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| Q |
121 |
ttgtagtgtgttcaaacctttatgccagagttcattttggacagttggggtgctcgcgtcaattagatttctgaaaaatgatgatgcgacaagccaatgc |
220 |
Q |
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| T |
6494118 |
ttgtagtgcgttcaaacttttatgccagagttcattttggacagttggggtgctcgtgtcaattagatttctgaaaaatgatgatgcgacaagccgatgc |
6494217 |
T |
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| Q |
221 |
agatgtttgattttaccacaagtttcaactgattagaccactactagttgaaagatggtttcattctgcgcttgatgatg |
300 |
Q |
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| T |
6494218 |
agatgtttgatttta-cacaagtttcaactgattagaccactactagttgaaagatggtttcattctgcgcttgatgatg |
6494296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 35 - 300
Target Start/End: Original strand, 44209060 - 44209320
Alignment:
| Q |
35 |
acaggtacgccaaacttctaaatgttctggtccctgggagggagattcctcccgatgcacatgaccgagtgtcagaaatattatccttgtagtgtgttca |
134 |
Q |
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| T |
44209060 |
acaggtacgccaaccttttgaatgttctggtccctgggagggagattcctcccgatgcacatgaccgagtgtccgaaatattatccttgtagtgtgttca |
44209159 |
T |
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| Q |
135 |
aacctttatgccagagttcattttggacagttggggtgctcgcgtcaattagatttctgaaaaatgatgatg---cgacaagccaatgcagatgtttgat |
231 |
Q |
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| T |
44209160 |
ttgttttatgccagagttcattctggacagcttgggtgctcgcgtcaattaggtttctgaaaaatgatgatgcaacaacaagccgatgcagatgtttgat |
44209259 |
T |
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| Q |
232 |
tttaccacaagtttcaactgattagaccactactagttgaaagatggtttcattctgcgcttgatgatg |
300 |
Q |
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| T |
44209260 |
tttaccacaagtttcaactgat--------tactagttgaaagatggtttgattctgcgcttgatgatg |
44209320 |
T |
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