View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13786_low_9 (Length: 294)
Name: NF13786_low_9
Description: NF13786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13786_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 271
Target Start/End: Complemental strand, 52583398 - 52583142
Alignment:
| Q |
15 |
catcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctgcaaagtgttacactgctctggcacttcaagcaatgtctaggcatt |
114 |
Q |
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| T |
52583398 |
catcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctgcaaagtgttacactgctctggcacttcaagcaatgtctaggcatt |
52583299 |
T |
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| Q |
115 |
tttgtagcttaagagatgccataatgtcccaaataaatgctgagaaaagaaaactgtttcaggatgtacctaaaattaatagtggattgtctcaactgag |
214 |
Q |
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| T |
52583298 |
tttgtagcttaagagatgccataatgtcccaaataaatgctgagaaaagaaaactgtttcaggatgtacctaaaattaatagtggattgtctcaactgag |
52583199 |
T |
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| Q |
215 |
cttatttgagagagataataatagacagactagaatgtctctccaacaacttggagt |
271 |
Q |
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| T |
52583198 |
cttatttgagagagataataatagacagactagaatgtctctccaacaacttggagt |
52583142 |
T |
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