View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13787_high_18 (Length: 262)

Name: NF13787_high_18
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13787_high_18
NF13787_high_18
[»] chr6 (19 HSPs)
chr6 (52-247)||(33255377-33255571)
chr6 (52-135)||(33621494-33621577)
chr6 (52-135)||(33704216-33704299)
chr6 (75-137)||(35218696-35218758)
chr6 (52-136)||(11572007-11572091)
chr6 (53-136)||(21000691-21000774)
chr6 (53-136)||(28322931-28323014)
chr6 (67-137)||(21037289-21037359)
chr6 (52-137)||(4464125-4464210)
chr6 (76-135)||(28592185-28592244)
chr6 (59-131)||(7197858-7197930)
chr6 (59-135)||(10226544-10226620)
chr6 (68-136)||(24619140-24619208)
chr6 (79-138)||(3057399-3057458)
chr6 (64-135)||(361011-361082)
chr6 (64-135)||(12252023-12252094)
chr6 (93-135)||(14939148-14939190)
chr6 (60-110)||(16518448-16518498)
chr6 (91-135)||(2959149-2959193)
[»] chr2 (31 HSPs)
chr2 (52-135)||(34460369-34460452)
chr2 (52-135)||(11708678-11708761)
chr2 (52-135)||(26605624-26605707)
chr2 (52-135)||(10639651-10639734)
chr2 (52-135)||(33083599-33083682)
chr2 (52-135)||(11459715-11459798)
chr2 (64-135)||(19537307-19537378)
chr2 (64-135)||(19816220-19816291)
chr2 (52-123)||(37197655-37197726)
chr2 (52-136)||(23839858-23839942)
chr2 (65-137)||(40786267-40786339)
chr2 (53-136)||(19048753-19048836)
chr2 (52-135)||(29659263-29659346)
chr2 (52-135)||(39535579-39535662)
chr2 (78-135)||(45125236-45125293)
chr2 (64-132)||(4800879-4800947)
chr2 (64-132)||(16654366-16654434)
chr2 (64-131)||(11816608-11816675)
chr2 (64-135)||(34234530-34234601)
chr2 (53-131)||(42025674-42025752)
chr2 (75-132)||(38440265-38440322)
chr2 (52-135)||(7275931-7276015)
chr2 (75-135)||(42578180-42578240)
chr2 (64-135)||(15782590-15782661)
chr2 (64-131)||(25501840-25501907)
chr2 (65-136)||(39831501-39831572)
chr2 (67-136)||(7349097-7349166)
chr2 (86-131)||(43684073-43684118)
chr2 (79-135)||(8742670-8742726)
chr2 (59-135)||(27137970-27138045)
chr2 (52-135)||(4851320-4851403)
[»] chr1 (24 HSPs)
chr1 (52-136)||(28455873-28455957)
chr1 (52-135)||(41761456-41761539)
chr1 (52-137)||(5055833-5055918)
chr1 (52-136)||(192414-192498)
chr1 (52-134)||(5943682-5943764)
chr1 (52-136)||(32007073-32007157)
chr1 (52-128)||(39276357-39276433)
chr1 (52-135)||(45813056-45813139)
chr1 (64-135)||(48660022-48660093)
chr1 (53-137)||(29587250-29587334)
chr1 (64-135)||(41808202-41808273)
chr1 (64-134)||(35945798-35945868)
chr1 (52-136)||(20747-20831)
chr1 (52-135)||(46447422-46447505)
chr1 (55-137)||(11688261-11688343)
chr1 (67-135)||(4065961-4066029)
chr1 (75-135)||(25931217-25931277)
chr1 (64-136)||(29994440-29994512)
chr1 (59-123)||(47111469-47111533)
chr1 (67-135)||(45294658-45294726)
chr1 (52-137)||(13109768-13109853)
chr1 (52-133)||(21938944-21939025)
chr1 (91-135)||(32982434-32982478)
chr1 (52-100)||(50106241-50106289)
[»] chr8 (30 HSPs)
chr8 (52-135)||(32333114-32333197)
chr8 (52-136)||(35779542-35779626)
chr8 (64-135)||(7792661-7792732)
chr8 (64-135)||(28817256-28817327)
chr8 (60-136)||(12534771-12534847)
chr8 (52-135)||(4531027-4531110)
chr8 (52-135)||(6602563-6602646)
chr8 (52-135)||(6678016-6678099)
chr8 (64-135)||(42192696-42192767)
chr8 (52-136)||(9292017-9292101)
chr8 (52-135)||(1385-1468)
chr8 (65-136)||(40911220-40911291)
chr8 (52-135)||(70568-70651)
chr8 (60-135)||(3822396-3822471)
chr8 (52-135)||(7813322-7813405)
chr8 (52-135)||(10963285-10963368)
chr8 (63-136)||(41753036-41753109)
chr8 (52-135)||(1078693-1078776)
chr8 (52-111)||(5385362-5385421)
chr8 (64-135)||(6099572-6099643)
chr8 (52-135)||(18386708-18386791)
chr8 (84-131)||(39303313-39303360)
chr8 (75-135)||(29425357-29425417)
chr8 (87-131)||(29513879-29513923)
chr8 (64-111)||(42885198-42885245)
chr8 (52-135)||(45264685-45264767)
chr8 (93-135)||(22979604-22979646)
chr8 (94-135)||(42364788-42364829)
chr8 (79-135)||(20269542-20269598)
chr8 (79-135)||(21056171-21056227)
[»] chr4 (36 HSPs)
chr4 (52-135)||(45874055-45874138)
chr4 (52-135)||(54768477-54768560)
chr4 (52-137)||(34739278-34739363)
chr4 (52-136)||(19849548-19849632)
chr4 (52-135)||(12735431-12735514)
chr4 (52-132)||(22607988-22608068)
chr4 (52-136)||(26424903-26424986)
chr4 (59-135)||(28798440-28798516)
chr4 (52-135)||(238503-238586)
chr4 (52-135)||(1173951-1174034)
chr4 (52-127)||(23417528-23417603)
chr4 (52-135)||(43139951-43140034)
chr4 (65-135)||(12867841-12867911)
chr4 (52-136)||(55214651-55214735)
chr4 (52-135)||(11277982-11278065)
chr4 (52-135)||(18257329-18257412)
chr4 (52-135)||(53457824-53457907)
chr4 (65-135)||(2864806-2864876)
chr4 (52-136)||(32441129-32441213)
chr4 (53-133)||(19225261-19225341)
chr4 (53-135)||(19673975-19674057)
chr4 (65-135)||(23710391-23710461)
chr4 (65-136)||(22910315-22910386)
chr4 (65-136)||(22968136-22968207)
chr4 (64-115)||(24518040-24518091)
chr4 (64-131)||(29581100-29581167)
chr4 (66-120)||(50033396-50033451)
chr4 (60-102)||(516509-516551)
chr4 (66-132)||(3465755-3465821)
chr4 (98-132)||(39800614-39800648)
chr4 (52-110)||(39807869-39807927)
chr4 (65-111)||(49030796-49030842)
chr4 (59-115)||(2804542-2804598)
chr4 (70-134)||(41679375-41679439)
chr4 (92-136)||(51287600-51287644)
chr4 (84-136)||(55400227-55400279)
[»] scaffold0032 (1 HSPs)
scaffold0032 (52-137)||(56479-56564)
[»] chr7 (32 HSPs)
chr7 (52-135)||(2146636-2146719)
chr7 (52-135)||(44083940-44084023)
chr7 (52-137)||(40058236-40058321)
chr7 (52-135)||(4106738-4106821)
chr7 (52-135)||(23358185-23358268)
chr7 (52-135)||(31770577-31770660)
chr7 (53-135)||(7162834-7162916)
chr7 (60-137)||(29255715-29255792)
chr7 (65-134)||(47250309-47250378)
chr7 (52-132)||(8439081-8439161)
chr7 (52-135)||(25546320-25546403)
chr7 (52-135)||(48444197-48444280)
chr7 (52-129)||(27229523-27229600)
chr7 (53-124)||(5587291-5587362)
chr7 (53-124)||(5592252-5592323)
chr7 (52-135)||(25112292-25112375)
chr7 (64-135)||(32606387-32606458)
chr7 (64-131)||(43753811-43753878)
chr7 (59-136)||(43203305-43203382)
chr7 (53-120)||(28603026-28603093)
chr7 (84-135)||(43171016-43171067)
chr7 (66-135)||(5772878-5772947)
chr7 (59-104)||(39514035-39514080)
chr7 (65-134)||(42081674-42081743)
chr7 (52-120)||(4107324-4107392)
chr7 (84-128)||(29484832-29484876)
chr7 (75-135)||(34763454-34763514)
chr7 (83-137)||(11355821-11355875)
chr7 (52-134)||(48146754-48146836)
chr7 (52-137)||(15634924-15635009)
chr7 (64-132)||(13887174-13887242)
chr7 (63-111)||(41183839-41183887)
[»] chr5 (23 HSPs)
chr5 (52-135)||(13203957-13204040)
chr5 (52-135)||(21018223-21018306)
chr5 (52-134)||(4824984-4825066)
chr5 (59-137)||(12257354-12257432)
chr5 (53-135)||(1191586-1191668)
chr5 (52-135)||(35317742-35317825)
chr5 (77-135)||(40177624-40177682)
chr5 (75-136)||(32143470-32143531)
chr5 (75-135)||(17465091-17465151)
chr5 (52-135)||(9577006-9577089)
chr5 (92-135)||(21112049-21112092)
chr5 (52-135)||(27721431-27721514)
chr5 (65-135)||(2970984-2971054)
chr5 (64-135)||(3386957-3387028)
chr5 (64-131)||(8734000-8734067)
chr5 (77-135)||(11124652-11124710)
chr5 (69-135)||(30127894-30127960)
chr5 (52-135)||(35545933-35546016)
chr5 (52-126)||(3049099-3049173)
chr5 (64-134)||(17984799-17984869)
chr5 (59-132)||(6020995-6021068)
chr5 (78-115)||(23262568-23262605)
chr5 (87-131)||(4444928-4444972)
[»] chr3 (27 HSPs)
chr3 (64-135)||(1778851-1778922)
chr3 (65-135)||(28844504-28844574)
chr3 (52-136)||(43247695-43247779)
chr3 (52-135)||(7824499-7824582)
chr3 (52-135)||(29689527-29689610)
chr3 (52-135)||(54151726-54151809)
chr3 (64-136)||(4601424-4601496)
chr3 (52-135)||(33334608-33334691)
chr3 (52-135)||(54158266-54158349)
chr3 (64-136)||(35461536-35461608)
chr3 (59-135)||(51665977-51666053)
chr3 (52-135)||(55018079-55018162)
chr3 (66-135)||(29750621-29750690)
chr3 (64-123)||(3113052-3113111)
chr3 (64-135)||(31255406-31255477)
chr3 (53-136)||(42392851-42392934)
chr3 (52-123)||(36229039-36229110)
chr3 (64-131)||(51112521-51112588)
chr3 (65-136)||(52500837-52500908)
chr3 (54-135)||(41377584-41377665)
chr3 (91-135)||(28458663-28458707)
chr3 (92-136)||(50729523-50729567)
chr3 (92-136)||(50783282-50783326)
chr3 (52-111)||(9349721-9349780)
chr3 (97-131)||(5998871-5998905)
chr3 (87-131)||(14868935-14868979)
chr3 (76-132)||(45686096-45686152)
[»] scaffold1348 (1 HSPs)
scaffold1348 (52-135)||(907-990)
[»] scaffold0360 (1 HSPs)
scaffold0360 (50-137)||(14493-14580)
[»] scaffold0119 (2 HSPs)
scaffold0119 (52-135)||(13996-14079)
scaffold0119 (52-135)||(19676-19759)
[»] scaffold0044 (1 HSPs)
scaffold0044 (59-135)||(10025-10101)
[»] scaffold0038 (1 HSPs)
scaffold0038 (53-136)||(114251-114334)
[»] scaffold0067 (1 HSPs)
scaffold0067 (59-136)||(34817-34894)
[»] scaffold0053 (1 HSPs)
scaffold0053 (52-124)||(22174-22246)
[»] scaffold0495 (1 HSPs)
scaffold0495 (59-135)||(3263-3339)
[»] scaffold0352 (1 HSPs)
scaffold0352 (52-136)||(8988-9072)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 52 - 247
Target Start/End: Complemental strand, 33255571 - 33255377
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagacttcaccaagattattt 151  Q
    |||||| ||||  ||||||||||| ||||| ||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||||||    
T  33255571 ctgtgaggtcccaggttcgaactcaggtca-aacgtccagccttacaattttggcatttgccagctgagctaggacttatagacttcaccaagattattt 33255473  T
Q  152 aattataattataagagggtatctaattccgttcatnnnnnnntatggcatctaatcttcttgttcgtatctttcataggtatgttggttcttgct 247  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  33255472 aattataattataagagggtatctaattccgttcataaaaaaatatggcatctaatattctcgttcgtatctttcataggtatgttggttcttgct 33255377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 33621577 - 33621494
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  33621577 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 33621494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 33704299 - 33704216
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  33704299 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 33704216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 35218696 - 35218758
Alignment:
Q  75 cgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    ||||||||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||    
T  35218696 cgggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggacttctagactt 35218758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 11572091 - 11572007
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||| |||| |||||||||| |||||||| |||||  ||||| ||||||| |||||||| || ||||||||||||||||||||    
T  11572091 ctgtgaggtcccgggttcgaacccgggtcacgacgtctggccttacaatttctgcatttgttagttgagctaggacttctagact 11572007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 21000774 - 21000691
Alignment:
Q  53 tgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||| |||| |||||||||| | |||||  |||| | ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  21000774 tgtgaggtcccgggttcgaacccaggtcatgacgtacggccttgcaatttcggcatttgccagttgagctaggacttctagact 21000691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 28323014 - 28322931
Alignment:
Q  53 tgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||| |||| |||||||||| ||| |||  |||||| ||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  28323014 tgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgccagttgagctaggacttctagact 28322931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 21037359 - 21037289
Alignment:
Q  67 ttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    ||||||| || |||||||||||| ||||||||||||| ||||||| ||| |||||||| ||||||||||||    
T  21037359 ttcgaacccgagtcacaacgtccggccttgcaatttcagcatttgccagttgagctagaacttctagactt 21037289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 4464210 - 4464125
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    |||||| ||||  ||||||||| ||| |||  |||||| ||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  4464210 ctgtgaggtcccaggttcgaacccggatcatgacgtccggccttgcaatttcggcatttgtcagttgaactagaacttctagactt 4464125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 28592185 - 28592244
Alignment:
Q  76 gggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||||||||||||||||  |||||||||||||| ||| | |||||||||||||||||    
T  28592185 gggtcacaacgtccagccttataatttcggcatttgccagttaagctaggacttctagac 28592244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 7197858 - 7197930
Alignment:
Q  59 gtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttct 131  Q
    |||| ||||||||||||||||||  ||||||| | || |||||| |||||||||||  |||||||||||||||    
T  7197858 gtcccgggttcgaactcgggtcaagacgtccaactttacaattttggcatttgtcaattgagctaggacttct 7197930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 10226544 - 10226620
Alignment:
Q  59 gtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||| |||||||||| || ||||| | ||||||| ||| |||||||| ||||| ||| |||||||||||||||||||    
T  10226544 gtcccgggttcgaacccgtgtcacgaagtccagctttgtaatttcggaatttgccagttgagctaggacttctagac 10226620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 24619140 - 24619208
Alignment:
Q  68 tcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||||||||||||| |||| | ||||| |||||| | |||||||||| |||| |||||||||||||||    
T  24619140 tcgaactcgggtcacgacgttcggccttacaattttgacatttgtcagttgagttaggacttctagact 24619208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 3057458 - 3057399
Alignment:
Q  79 tcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagacttc 138  Q
    ||||||||||||||||| |||||||| ||||| |||  |||||||| |||||||||||||    
T  3057458 tcacaacgtccagccttacaatttcgacatttatcaattgagctagaacttctagacttc 3057399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 361082 - 361011
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||| || ||||| | || | |||||||||||| |||||||| ||| ||||||| |||||||||||    
T  361082 gggttcgaacccgtgtcacgatgttcggccttgcaattttggcatttgccagatgagctaagacttctagac 361011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 12252094 - 12252023
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| ||| | |||||| || ||| | |||||||| |||| ||||||||| |||||||||||||||||||    
T  12252094 gggttcaaaccctggtcacgacatccggtcttgcaatctcggtatttgtcagttgagctaggacttctagac 12252023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 14939190 - 14939148
Alignment:
Q  93 cttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||    
T  14939190 cttgcaatttcggcatttgccagttgagttaggacttctagac 14939148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 16518498 - 16518448
Alignment:
Q  60 tcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcattt 110  Q
    |||||||||||||| | |||||||||||||  ||||||||||| |||||||    
T  16518498 tcctgggttcgaacccaggtcacaacgtccgaccttgcaattttggcattt 16518448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 2959193 - 2959149
Alignment:
Q  91 gccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||||||||||||||  || |||| ||||||||||||||    
T  2959193 gccttgcaatttcggcatttgctagttgagttaggacttctagac 2959149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 34460452 - 34460369
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| || |||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  34460452 ctgtgaggttctgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgtcagttgagctaggacttctagac 34460369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 11708761 - 11708678
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||    
T  11708761 ctgtgaggtcctgggttcgaacccgggtcacaacgtccggccttacaatttcggcatttgccagttgagctaggacttctagac 11708678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 26605707 - 26605624
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  26605707 ctgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 26605624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 10639651 - 10639734
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  10639651 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 10639734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 33083599 - 33083682
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  33083599 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 33083682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 11459798 - 11459715
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  ||||||  |||||||||||||||||||| ||| |||||||||||||||||||    
T  11459798 ctgtgaggtcccgggttcgaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagac 11459715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 19537378 - 19537307
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||| ||| ||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||    
T  19537378 gggttcgaacccggatcacaacgtccggccttgcaatttcggcatttgccagttgaactaggacttctagac 19537307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 19816291 - 19816220
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| ||| ||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  19816291 gggttcaaacccgggtcacaacgtccggccttgcaatttcggtatttgccagttgagctaggacttctagac 19816220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 37197655 - 37197726
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagcta 123  Q
    |||||| |||| |||||||||| |||||||| |||||||||||||||||||||||||||| ||| |||||||    
T  37197655 ctgtgaggtcccgggttcgaacccgggtcacgacgtccagccttgcaatttcggcatttgccagttgagcta 37197726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 23839942 - 23839858
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||| ||||  ||||||||| | ||||||||||||| |||||||||||| |||||||| ||| |||| |||||||||||||||    
T  23839942 ctgtgaggtcccaggttcgaacccaggtcacaacgtccggccttgcaattttggcatttgccagttgagttaggacttctagact 23839858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 40786267 - 40786339
Alignment:
Q  65 ggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    |||||||||  ||||||| |||||| ||||||||||||||||||||||||| |||| || |||||||||||||    
T  40786267 ggttcgaaccagggtcacgacgtccggccttgcaatttcggcatttgtcagttgagttatgacttctagactt 40786339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 19048836 - 19048753
Alignment:
Q  53 tgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||| |||| |||||||||| ||| |||  |||||| ||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  19048836 tgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgccagttgagctaggacttctagact 19048753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 29659263 - 29659346
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| ||| ||||||||||| |||||||||| || | ||||| |||||| |||||||| ||| |||||||||||||||||||    
T  29659263 ctgtgaggtcatgggttcgaacccgggtcacaatgttcggccttacaattttggcatttgccagttgagctaggacttctagac 29659346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 39535579 - 39535662
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||| |||||| |||||||||||||| ||||||  || |||| ||||||||||||||    
T  39535579 ctgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcgacatttgctagttgagttaggacttctagac 39535662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 45125236 - 45125293
Alignment:
Q  78 gtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||    
T  45125236 gtcacaacgtccggccttacaatttcggcatttgccagttgagctaggacttctagac 45125293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 4800947 - 4800879
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttcta 132  Q
    |||||||||||| |||||| ||||||||||||||||||||| |||||| | | |||||||| |||||||    
T  4800947 gggttcgaactcaggtcacgacgtccagccttgcaatttcgacatttgccggttgagctagaacttcta 4800879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 16654434 - 16654366
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttcta 132  Q
    |||||||||||||| ||||  ||||| |||||||||||||||||||| |||| |||| |||||||||||    
T  16654434 gggttcgaactcggatcacggcgtccggccttgcaatttcggcatttatcagttgagttaggacttcta 16654366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 11816608 - 11816675
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttct 131  Q
    |||||||||| | |||||| ||||||  |||||||||||||||||||| ||| |||||||||||||||    
T  11816608 gggttcgaacccaggtcacgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttct 11816675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 34234601 - 34234530
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| ||||| | ||||||| |||  |||||||||||||||||||| ||| |||||||||||||||||||    
T  34234601 gggttcaaactcagatcacaacatccgaccttgcaatttcggcatttgccagttgagctaggacttctagac 34234530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 42025752 - 42025674
Alignment:
Q  53 tgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttct 131  Q
    ||||| || |||||||||||||| |||||| || ||| |||||  ||||||| |||||||||| |||||||||||||||    
T  42025752 tgtgaggttctgggttcgaactcaggtcacgacatccggccttaaaatttcgacatttgtcagttgagctaggacttct 42025674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 38440265 - 38440322
Alignment:
Q  75 cgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttcta 132  Q
    |||||||| |||||| ||||||||||||||||||||||||| |||||| | |||||||    
T  38440265 cgggtcacgacgtccggccttgcaatttcggcatttgtcagttgagctggaacttcta 38440322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 7275931 - 7276015
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggca-tttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||| ||| || |||  |||||||||||||||| |||||||| |||| ||||||||||||||    
T  7275931 ctgtgaggtcccgggttcgaacccgggccacgacatccgaccttgcaatttcggcattttgtcagttgagttaggacttctagac 7276015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 42578240 - 42578180
Alignment:
Q  75 cgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||  ||||||  |||||||||||||||||||| ||| |||||||||||||||||||    
T  42578240 cgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagac 42578180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 15782661 - 15782590
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||| |||||||  ||||||  |||| ||||||||||||||||||  ||||||||||||| |||||    
T  15782661 gggttcgaacccgggtcatgacgtccgaccttacaatttcggcatttgtcaattgagctaggacttttagac 15782590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 25501840 - 25501907
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttct 131  Q
    ||||||||||   |||||| |||||| ||||||||||||| ||||||| ||| |||||||||||||||    
T  25501840 gggttcgaacctaggtcacgacgtccggccttgcaatttcagcatttgccagttgagctaggacttct 25501907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 39831501 - 39831572
Alignment:
Q  65 ggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||||||| ||| |||  |||||| ||||||||||||||| ||||| ||| ||||||||||||| ||||||    
T  39831501 ggttcgaacccggatcatgacgtccggccttgcaatttcggtatttgccagttgagctaggacttatagact 39831572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 7349166 - 7349097
Alignment:
Q  67 ttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||||||||| |||| |||||| |||||||||| || ||||||| ||| |||| | |||||||||||||    
T  7349166 ttcgaactcggatcacgacgtccggccttgcaatatcagcatttgccagttgagattggacttctagact 7349097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 43684118 - 43684073
Alignment:
Q  86 gtccagccttgcaatttcggcatttgtcagctgagctaggacttct 131  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||||    
T  43684118 gtccggccttgcaatttcggcatttgtcagttgagataggacttct 43684073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 8742670 - 8742726
Alignment:
Q  79 tcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||| |||| ||||||  |||||||||| |||||||| |||||||||||||||||||    
T  8742670 tcacgacgttcagcctaacaatttcggcctttgtcagttgagctaggacttctagac 8742726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 27137970 - 27138045
Alignment:
Q  59 gtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||| |||||||||| | |||||| | || | ||||| ||||||| ||||||||||| |||||||||||||||||||    
T  27137970 gtcccgggttcgaacccaggtcacgatgttcggcctt-caatttcagcatttgtcagttgagctaggacttctagac 27138045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 4851403 - 4851320
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| ||||| |||| ||| |||| |||||| || || ||||||||||| ||| ||| |||||||||||||| ||||    
T  4851403 ctgtgaggtcccgggtttgaacccggatcacgacgtccggctttacaatttcggcaattgacagttgagctaggacttcaagac 4851320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 28455957 - 28455873
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||| |||| |||||||||| ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  28455957 ctgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagact 28455873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 41761456 - 41761539
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||    
T  41761456 ctgtgaggtcctgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgaactaggacttctagac 41761539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 5055833 - 5055918
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  5055833 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagctgagctaggacttctagactt 5055918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 192498 - 192414
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||| ||||||||||||||| ||| ||||||||||| ||||||||||||  ||||||||||| ||||||||||||||||||||    
T  192498 ctgtgaggtcctgggttcgaacacggatcacaacgtccggccttgcaattttagcatttgtcagttgagctaggacttctagact 192414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 5943764 - 5943682
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctaga 134  Q
    |||||| |||||| |||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||| |||||||    
T  5943764 ctgtgaggtcctgagttcgaacccgggtcacgacgtccggccttgcaatttcggcatttgtcagttgagctaggaattctaga 5943682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 32007157 - 32007073
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  32007157 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagact 32007073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 39276433 - 39276357
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggact 128  Q
    |||||| |||| |||||||||| ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  39276433 ctgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggact 39276357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 45813056 - 45813139
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||| | ||||  |||||||||||||||||||||||| |||||||||||||||||||    
T  45813056 ctgtgaggtcccgggttcgaacccgggtcacgatgtccgaccttgcaatttcggcatttgtcagttgagctaggacttctagac 45813139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 48660093 - 48660022
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  48660093 gggttcgaacccgggtcataacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 48660022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 29587334 - 29587250
Alignment:
Q  53 tgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    ||||| |||| |||||||||| | |||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||| ||||    
T  29587334 tgtgaggtcccgggttcgaacccaggtcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctaaactt 29587250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 41808273 - 41808202
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  41808273 gggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 41808202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 35945868 - 35945798
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctaga 134  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||    
T  35945868 gggttcgaacccaggtcacaacgtccagccttacaatttcggcatttaccagttgagctaggacttctaga 35945798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 20831 - 20747
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||| |||| |||||||||  ||||||||  ||||| ||||||||||||||||||||| ||| |||| |||||||||||||||    
T  20831 ctgtgaggtcccgggttcgaatccgggtcacggcgtcctgccttgcaatttcggcatttgccagttgagttaggacttctagact 20747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 46447422 - 46447505
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| ||||| || ||||| |||||||||||||||||||||| ||| ||| |||| ||||||||||    
T  46447422 ctgtgaggtcccgggttcgaacccgggttacgacgtcgagccttgcaatttcggcatttgccagttgaactagaacttctagac 46447505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 11688343 - 11688261
Alignment:
Q  55 tgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    ||||||||||  |||||||  |||||||||||| | | ||||||||||||  ||||||||| |||||||||||||||||||||    
T  11688343 tgaagtcctgaattcgaaccagggtcacaacgttcgggcttgcaatttcgatatttgtcagttgagctaggacttctagactt 11688261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 4066029 - 4065961
Alignment:
Q  67 ttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||| ||| ||||||||| ||| ||||||||||||| ||||||||| ||||||||| |||||||||    
T  4066029 ttcgaacccggatcacaacgttcagtcttgcaatttcggtatttgtcagttgagctaggtcttctagac 4065961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 25931217 - 25931277
Alignment:
Q  75 cgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||| ||||| |||||||||||||||||||||||||| |||| ||||| ||||||||    
T  25931217 cgggtcacgacgtctagccttgcaatttcggcatttgtcagttgagttaggatttctagac 25931277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 29994440 - 29994512
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||||||| ||| |||  |||||  ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  29994440 gggttcgaacccggatcatgacgtctggccttgcaatttcggcatttgccagttgagctaggacttctagact 29994512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 47111533 - 47111469
Alignment:
Q  59 gtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagcta 123  Q
    ||||||||||| ||| | |||||| ||||||  |||||||||||||||||||||||| |||||||    
T  47111533 gtcctgggttcaaacccaggtcacgacgtccgaccttgcaatttcggcatttgtcagttgagcta 47111469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 45294726 - 45294658
Alignment:
Q  67 ttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||| |||||||  | |||| | |||||||||||||||||||  || |||||||||||||||||||    
T  45294726 ttcgaacccgggtcatgatgtccggtcttgcaatttcggcatttgctagttgagctaggacttctagac 45294658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 13109853 - 13109768
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    |||||| || || |||||||| |||||| || ||||||  |||||||||||   |||||||||| | |||||| ||||||||||||    
T  13109853 ctgtgaggttctaggttcgaattcgggttacgacgtccgaccttgcaatttaatcatttgtcagttaagctagaacttctagactt 13109768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 21939025 - 21938944
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctag 133  Q
    |||||| ||||||| ||||||  ||| |||  || ||| ||||| ||||||||||||||  ||| |||||||||||||||||    
T  21939025 ctgtgaggtcctggattcgaatccggatcatgacatccggccttacaatttcggcatttaccagttgagctaggacttctag 21938944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 32982434 - 32982478
Alignment:
Q  91 gccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||| || ||||||||||| |||| |||||||||||||||||||    
T  32982434 gccttacagtttcggcatttatcagttgagctaggacttctagac 32982478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 50106241 - 50106289
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaat 100  Q
    |||||| |||| |||||||||| ||||||||||||| | ||||||||||    
T  50106241 ctgtgaggtcccgggttcgaacccgggtcacaacgttcggccttgcaat 50106289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 32333197 - 32333114
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  32333197 ctgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 32333114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 35779542 - 35779626
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||| |||| |||||||||| ||||||||||||||| |||||||||||| |||||||| ||| ||||||||||||||||||||    
T  35779542 ctgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggacttctagact 35779626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 7792732 - 7792661
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||| || |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  7792732 gggttcgaacccgagtcacaacgtccagccttgcaatttcggcatttgccagttgagctaggacttctagac 7792661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 28817327 - 28817256
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  28817327 gggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 28817256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 12534771 - 12534847
Alignment:
Q  60 tcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||||||||||| ||| |||| |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  12534771 tcctgggttcgaacccggatcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagact 12534847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 4531027 - 4531110
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  |||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  4531027 ctgtgaggtcccgggttcgaacccgggtcatgacgtccagccttgcaatttcggcatttgccaattgagctaggacttctagac 4531110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 6602563 - 6602646
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  6602563 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 6602646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 6678016 - 6678099
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  6678016 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 6678099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 42192696 - 42192767
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  42192696 gggttcgaactcgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 42192767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 9292101 - 9292017
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||||||||| | ||||||| |||||||||||||||| || || |||||||| |||||| ||| ||||||||||||||||||||    
T  9292101 ctgtgaagtcccgagttcgaattcgggtcacaacgtccggctttacaatttcgacatttgccagttgagctaggacttctagact 9292017  T

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Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 1385 - 1468
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| ||||||||||  |||||||||||||| |||||||||||| |||||||| ||| |||||||| ||||||||||    
T  1385 ctgtgaggtcccgggttcgaaccagggtcacaacgtccggccttgcaattttggcatttgccagttgagctagaacttctagac 1468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 40911291 - 40911220
Alignment:
Q  65 ggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||||||| |||||||| |||||| ||||||||||||||||||||| ||| |||||||| |||||||||||    
T  40911291 ggttcgaacccgggtcacgacgtccggccttgcaatttcggcatttgccagttgagctagcacttctagact 40911220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 70568 - 70651
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||| ||| |||||||  ||||||  |||||||||||||||||||| ||| |||||||||||||||||||    
T  70568 ctgtgaggtcccgggttcaaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagac 70651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 3822471 - 3822396
Alignment:
Q  60 tcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||||||| |||||||||||||||  |||| ||||||||||||||| ||| ||| |||| ||||||||||    
T  3822471 tcctgggttcgaacccgggtcacaacgtccgaccttacaatttcggcatttgccagttgaactagaacttctagac 3822396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 7813405 - 7813322
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| || |||||||| ||| ||||||||||||| ||||||| | | |||||||||||||||||||    
T  7813405 ctgtgaggtcccgggttcgaacccgagtcacaacatccggccttgcaatttcagcatttgccggttgagctaggacttctagac 7813322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 10963285 - 10963368
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| ||||||||||  || ||||||||| | |||||| |||||||||||||| ||| |||||||||||||||||||    
T  10963285 ctgtgaggtcccgggttcgaacctggatcacaacgttcggccttgtaatttcggcatttgccagttgagctaggacttctagac 10963368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 41753036 - 41753109
Alignment:
Q  63 tgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||||||| |||| |||| || ||| | |||||||||||| |||||||||| ||||||||||||||||||||    
T  41753036 tgggttcgaattcggatcacgacatccggtcttgcaatttcgacatttgtcagttgagctaggacttctagact 41753109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 1078693 - 1078776
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| ||||||||||  ||||||  |||||| ||||||||||||||||||||  ||| ||||||| |||||||||||    
T  1078693 ctgtgaggtcccgggttcgaacctgggtcatgacgtccggccttgcaatttcggcatttaccagttgagctacgacttctagac 1078776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 5385421 - 5385362
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttg 111  Q
    |||||| |||| ||||||||||  ||||||| ||||||||||||||||||||||||||||    
T  5385421 ctgtgaggtcccgggttcgaacctgggtcacgacgtccagccttgcaatttcggcatttg 5385362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 6099643 - 6099572
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||||||||||||||  |||||| |||||||||||||| ||||||  || ||| |||||||||||||||    
T  6099643 gggttcgaactcgggtcatgacgtccggccttgcaatttcgacatttgcaagttgaactaggacttctagac 6099572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 18386791 - 18386708
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| || ||||  || |||  |||||||||||| ||||||||||| |||||||| ||||||||||    
T  18386791 ctgtgaggtcccgggttcgaacccgagtcatgacatccgaccttgcaatttcagcatttgtcagttgagctagaacttctagac 18386708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 39303360 - 39303313
Alignment:
Q  84 acgtccagccttgcaatttcggcatttgtcagctgagctaggacttct 131  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  39303360 acgtccggccttgcaatttcggcatttgccagttgagctaggacttct 39303313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 29425417 - 29425357
Alignment:
Q  75 cgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||  |||||| |||||||||||| |||||||| ||  |||||||||||||||||||    
T  29425417 cgggtcatgacgtccggccttgcaattttggcatttgccaattgagctaggacttctagac 29425357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 29513923 - 29513879
Alignment:
Q  87 tccagccttgcaatttcggcatttgtcagctgagctaggacttct 131  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||    
T  29513923 tccagcctaacaatttcggcatttgtcagttgagctaggacttct 29513879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 42885245 - 42885198
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttg 111  Q
    |||||||||| |||||||  |||||| |||||||||||||||||||||    
T  42885245 gggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttg 42885198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 45264685 - 45264767
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| || ||||| |||| |  ||| |||||||||||||||| ||| |||| ||||||||||||||    
T  45264685 ctgtgaggtcccgggttcgaacccgagtcacgacgttcgacct-gcaatttcggcatttgccagttgagttaggacttctagac 45264767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 22979646 - 22979604
Alignment:
Q  93 cttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||||| |||||| ||| |||||||||||||||||||    
T  22979646 cttgcaatttcgacatttgccagttgagctaggacttctagac 22979604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 42364788 - 42364829
Alignment:
Q  94 ttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||||||||||| ||| |||| ||||||||||||||    
T  42364788 ttgcaatttcggcatttggcagttgagataggacttctagac 42364829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 20269598 - 20269542
Alignment:
Q  79 tcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||||||| ||||| ||||||||| ||||| ||| ||||||| ||||| |||||    
T  20269598 tcacaacgtccggccttacaatttcggtatttgccagttgagctaagacttttagac 20269542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 21056227 - 21056171
Alignment:
Q  79 tcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||||||| ||||| ||||||||| ||||| ||| ||||||| ||||| |||||    
T  21056227 tcacaacgtccggccttacaatttcggtatttgccagttgagctaagacttttagac 21056171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 45874138 - 45874055
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||    
T  45874138 ctgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcatttgtcagttgagctaggacttctagac 45874055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 54768477 - 54768560
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| ||||||||||||||| |||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  54768477 ctgtgaggtcctgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 54768560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 34739363 - 34739278
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||||    
T  34739363 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagactt 34739278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 19849548 - 19849632
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||| |||| |||||||||| ||| |||| |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  19849548 ctgtgaggtcccgggttcgaacccggatcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagact 19849632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 12735514 - 12735431
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| ||||||||||||||| ||||||||||||||  ||||| |||||| |||||||||||| |||||||| ||||||||||    
T  12735514 ctgtgaggtcctgggttcgaacccgggtcacaacgtctggccttacaattttggcatttgtcagttgagctagtacttctagac 12735431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 22608068 - 22607988
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttcta 132  Q
    |||||| |||| |||||||||| |||||||| |||||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  22608068 ctgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcgacatctgtcagttgagctaggacttcta 22607988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 26424903 - 26424986
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  26424903 ctgtgaggtcccgggttcgaacccgggtcatgacgtcc-gccttgcaatttcggcatttgccagttgagctaggacttctagact 26424986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 28798440 - 28798516
Alignment:
Q  59 gtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||| |||||||||| |||||||| |||||| ||||||||||||||||||||| ||| ||| |||||||||||||||    
T  28798440 gtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcggcatttgccagttgaactaggacttctagac 28798516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 238503 - 238586
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| | |||||   ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  238503 ctgtgaggtcccgggttcgaacccaggtcatggcgtccagccttgcaatttcggcatttgacagttgagctaggacttctagac 238586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 1174034 - 1173951
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| | |||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  1174034 ctgtgaggtcccgggttcgaacccaggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 1173951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 23417528 - 23417603
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggac 127  Q
    |||| |||||| |||||||||| ||||||||||||||| |||||||||||| |||||||| ||| |||||||||||    
T  23417528 ctgtaaagtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggac 23417603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 43139951 - 43140034
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| |||||||| ||||||||||    
T  43139951 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctagaacttctagac 43140034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 12867911 - 12867841
Alignment:
Q  65 ggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||||||||||| ||||||  |||||||||||||||||||| ||| |||||||| ||||||||||    
T  12867911 ggttcgaactcgggtcacgacgtccgaccttgcaatttcggcatttgacagttgagctagaacttctagac 12867841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 55214735 - 55214651
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||| |||| |||||||||| |||||||| |||||| |||||||||||| |||||||| ||| |||| || ||||||||||||    
T  55214735 ctgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaattttggcatttgacagttgagttaagacttctagact 55214651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 11278065 - 11277982
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| ||||| |||| |||||||  | |||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  11278065 ctgtgaggtcccgggtttgaacccgggtcatgatgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 11277982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 18257412 - 18257329
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| ||| |||||| ||| |||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  18257412 ctgtgaggtcccgggctcgaacccggatcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 18257329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 53457907 - 53457824
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| || ||||||| |||||||  ||||||  |||||||||||||||||||| ||| |||||||||||||||||||    
T  53457907 ctgtgaggtcccggattcgaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagac 53457824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 2864806 - 2864876
Alignment:
Q  65 ggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||||| |||||||| |||||| |||||||||||| |||||||| ||| |||| ||||||||||||||    
T  2864806 ggttcgaacccgggtcacgacgtcccgccttgcaatttaggcatttgccagttgagttaggacttctagac 2864876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 32441129 - 32441213
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||| |||| |||||||||| |||||||  | |||  |||||||||||||| |||||| ||| ||||||||||||||||||||    
T  32441129 ctgtgaggtcccgggttcgaacccgggtcatgatgtctggccttgcaatttcgacatttgccagttgagctaggacttctagact 32441213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 19225341 - 19225261
Alignment:
Q  53 tgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctag 133  Q
    ||||| |||| |||||||||| ||| |||  |||||| || || ||||||||||||||| ||| |||||||||||||||||    
T  19225341 tgtgaggtcccgggttcgaacccggatcatgacgtccggctttacaatttcggcatttgccagttgagctaggacttctag 19225261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 19673975 - 19674057
Alignment:
Q  53 tgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||| |||| |||||||||| | ||||||||||| | |||||||||||||  |||||  ||| ||||||| |||||||||||    
T  19673975 tgtgaggtcccgggttcgaacccaggtcacaacgttcggccttgcaatttctacatttaccagttgagctaagacttctagac 19674057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 23710391 - 23710461
Alignment:
Q  65 ggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||||  |||||||| |||||| |||||||||||||| |||||  ||| ||||||| |||||||||||    
T  23710391 ggttcgaatccgggtcacgacgtccggccttgcaatttcgacatttaccagttgagctatgacttctagac 23710461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 22910315 - 22910386
Alignment:
Q  65 ggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||||||| |||||||| ||||||  ||||||||||||| | |||||||| |||||   ||||||||||||    
T  22910315 ggttcgaacccgggtcacgacgtccgaccttgcaatttcgacttttgtcagttgagcggagacttctagact 22910386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 22968207 - 22968136
Alignment:
Q  65 ggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||||||| |||||||| ||||||  ||||||||||||| | |||||||| |||||   ||||||||||||    
T  22968207 ggttcgaacccgggtcacgacgtccgaccttgcaatttcgacttttgtcagttgagcggagacttctagact 22968136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 24518040 - 24518091
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcag 115  Q
    |||||||||| ||||||||||||||| | ||| ||||||| |||||||||||    
T  24518040 gggttcgaacacgggtcacaacgtccggtcttacaatttcagcatttgtcag 24518091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 29581100 - 29581167
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttct 131  Q
    ||||||||||   |||||| |||||| |||||||||||||||||| || ||  |||||||||||||||    
T  29581100 gggttcgaacctaggtcacgacgtccggccttgcaatttcggcatctgacaattgagctaggacttct 29581167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 50033451 - 50033396
Alignment:
Q  66 gttcgaactcgggtcacaacgtccag-ccttgcaatttcggcatttgtcagctgag 120  Q
    |||||||| ||||||||||||||||| | |||||||||||||||||| ||| ||||    
T  50033451 gttcgaacccgggtcacaacgtccagtctttgcaatttcggcatttgacagttgag 50033396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 516509 - 516551
Alignment:
Q  60 tcctgggttcgaactcgggtcacaacgtccagccttgcaattt 102  Q
    |||||||||| |||||| ||||||||||||| |||||||||||    
T  516509 tcctgggttcaaactcgagtcacaacgtccaaccttgcaattt 516551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 3465821 - 3465755
Alignment:
Q  66 gttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttcta 132  Q
    ||||||||  || ||||||||||| ||||||||||||||  |||||  || ||||||||||||||||    
T  3465821 gttcgaacctggatcacaacgtccggccttgcaatttcgatatttgctagttgagctaggacttcta 3465755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 39800614 - 39800648
Alignment:
Q  98 aatttcggcatttgtcagctgagctaggacttcta 132  Q
    |||||||||||||||||| ||||||||||||||||    
T  39800614 aatttcggcatttgtcagttgagctaggacttcta 39800648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 39807927 - 39807869
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcattt 110  Q
    |||||| |||| | ||||||||||||||||| | |||  ||||||||||||||||||||    
T  39807927 ctgtgaggtcccgagttcgaactcgggtcacgatgtctggccttgcaatttcggcattt 39807869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 49030796 - 49030842
Alignment:
Q  65 ggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttg 111  Q
    ||||||||||||| |||| |||||| |||||||||||||| ||||||    
T  49030796 ggttcgaactcggatcacgacgtccggccttgcaatttcgacatttg 49030842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 2804598 - 2804542
Alignment:
Q  59 gtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcag 115  Q
    ||||| ||||||||| |||||||||||||||  |||| ||||||  |||||||||||    
T  2804598 gtcctaggttcgaacccgggtcacaacgtccgaccttacaattttagcatttgtcag 2804542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 41679439 - 41679375
Alignment:
Q  70 gaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctaga 134  Q
    ||||||| ||||| ||||||  ||||| |||||| ||||||||||| |||||||| |||| ||||    
T  41679439 gaactcgagtcacgacgtccgaccttgtaatttcagcatttgtcagttgagctagaacttttaga 41679375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 51287644 - 51287600
Alignment:
Q  92 ccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||| |||||| |||||||||||||||||||  ||||||||||||    
T  51287644 ccttacaattttggcatttgtcagctgagctgtgacttctagact 51287600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 55400279 - 55400227
Alignment:
Q  84 acgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||| ||||||||||||||||||||  ||| |||| ||||| |||||||||    
T  55400279 acgtccggccttgcaatttcggcatttaccagttgagttaggatttctagact 55400227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 56564 - 56479
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    |||||| |||| |||||||||| |||||||||||||||  |||||||||||||||||||| ||| |||||||||||||||||||||    
T  56564 ctgtgaggtcccgggttcgaacccgggtcacaacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagactt 56479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 2146719 - 2146636
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||||||  ||| |||||||||||||||||||    
T  2146719 ctgtgaggtcttgggttcgaacccgggtcacaacgtccggccttgcaatttcggcattttccagttgagctaggacttctagac 2146636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 44084023 - 44083940
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| ||||||||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||    
T  44084023 ctgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggacttctagac 44083940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 40058321 - 40058236
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    |||||| |||| |||||||||| ||||||||||||||| |||||||||||| |||||||| ||| |||| ||||||||||||||||    
T  40058321 ctgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcatttgccagttgagttaggacttctagactt 40058236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 4106821 - 4106738
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| || ||||||||||||||||    
T  4106821 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgggctaggacttctagac 4106738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 23358268 - 23358185
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| ||||| || |||||| ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  23358268 ctgtgaggtcccgggttcgaacccgggttacgacgtccggccttgcaatttcggtatttgccagttgagctaggacttctagac 23358185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 31770577 - 31770660
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  || ||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  31770577 ctgtgaggtcccgggttcgaacccgggtcatgacatccggccttgcaatttcggcatttgccagttgagctaggacttctagac 31770660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 7162834 - 7162916
Alignment:
Q  53 tgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||| |||| | |||||||| ||||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||| |||||    
T  7162834 tgtgaggtcccgagttcgaacccgggtcacaacgtccggccttacaatttcggcatttgccagttgagctaggacttttagac 7162916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 29255792 - 29255715
Alignment:
Q  60 tcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    |||||||||||||| ||| |||| ||||||| ||||||||||| |||||||| ||| |||||||| ||||||||||||    
T  29255792 tcctgggttcgaacccggatcacgacgtccaaccttgcaattttggcatttgccagttgagctagaacttctagactt 29255715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 47250309 - 47250378
Alignment:
Q  65 ggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctaga 134  Q
    ||||||||| |||||||  |||||| ||||||||||||||||||||| ||| ||||||||||||||||||    
T  47250309 ggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctaga 47250378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 8439161 - 8439081
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttcta 132  Q
    |||||| ||||||||||||||  |||||||||||||||  ||||||||||| |||||||| ||| ||| ||||||||||||    
T  8439161 ctgtgaggtcctgggttcgaatccgggtcacaacgtccgaccttgcaattttggcatttgccagttgaactaggacttcta 8439081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 25546320 - 25546403
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| || ||||||| |||||||  |||||| ||||||||||||||||||||  ||| |||||||||||||||||||    
T  25546320 ctgtgaggtcccggattcgaacccgggtcatgacgtccggccttgcaatttcggcatttaccagttgagctaggacttctagac 25546403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 48444197 - 48444280
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||||| | |||||||||| | | |||| |||||||| ||| |||||||||||||| |||| |||||||||||||||||||    
T  48444197 ctgtgaagtacagggttcgaacccagatcacgacgtccagtcttacaatttcggcatttttcagttgagctaggacttctagac 48444280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 27229523 - 27229600
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggactt 129  Q
    |||||| |||| |||||||||| | |||||| |||||| |||||||||||||| |||||||||| |||| ||||||||    
T  27229523 ctgtgaggtcccgggttcgaacccaggtcacgacgtccggccttgcaatttcgacatttgtcagttgagttaggactt 27229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 5587362 - 5587291
Alignment:
Q  53 tgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctag 124  Q
    ||||| ||||||||||||||| ||| |||| | |||| | ||||||||||||||||||||||| ||||||||    
T  5587362 tgtgaggtcctgggttcgaacccggatcacgatgtccggacttgcaatttcggcatttgtcagttgagctag 5587291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 5592323 - 5592252
Alignment:
Q  53 tgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctag 124  Q
    ||||| ||||||||||||||| ||| |||| | |||| | ||||||||||||||||||||||| ||||||||    
T  5592323 tgtgaggtcctgggttcgaacccggatcacgatgtccggacttgcaatttcggcatttgtcagttgagctag 5592252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 25112292 - 25112375
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| | |||||  ||||||  |||||||||||||| ||||| ||| |||||||||||||||||||    
T  25112292 ctgtgaggtcccgggttcgaacccaggtcatgacgtccgaccttgcaatttcggtatttgccagttgagctaggacttctagac 25112375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 32606387 - 32606458
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||||||  ||||||| |||||| ||||||||||||||| ||||||||| |||| ||| ||||||||||    
T  32606387 gggttcgaacctgggtcacgacgtccggccttgcaatttcggtatttgtcagttgagttagaacttctagac 32606458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 43753811 - 43753878
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttct 131  Q
    |||||||||| | |||||| |||||| ||||||||||||||||||||| ||| ||| |||||||||||    
T  43753811 gggttcgaacccaggtcacgacgtccggccttgcaatttcggcatttgccagttgaactaggacttct 43753878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 43203382 - 43203305
Alignment:
Q  59 gtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||| |||||||||| ||||||||  ||||| ||||| ||||||||||||||| ||| | | ||||||||||||||||    
T  43203382 gtcccgggttcgaacccgggtcacggcgtcccgccttacaatttcggcatttgccagttcatctaggacttctagact 43203305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 28603093 - 28603026
Alignment:
Q  53 tgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgag 120  Q
    |||||||||  |||||||||||| |||||| |||||| ||||||| ||||||||||||| ||| ||||    
T  28603093 tgtgaagtctcgggttcgaactcaggtcacgacgtccggccttgcgatttcggcatttgccagttgag 28603026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 43171016 - 43171067
Alignment:
Q  84 acgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||| |||||    
T  43171016 acgtccggccttgcaatttcggcatttgtcagttgagttaggacttatagac 43171067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 5772878 - 5772947
Alignment:
Q  66 gttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||| |||||||||  ||||  |||||||||||||||||||| | | ||||||| |||||||||||    
T  5772878 gttcgaacccgggtcacattgtccgaccttgcaatttcggcatttgcccgttgagctaagacttctagac 5772947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 39514035 - 39514080
Alignment:
Q  59 gtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcg 104  Q
    |||| ||||||||||||||||||| |||||| ||||||||||||||    
T  39514035 gtcccgggttcgaactcgggtcacgacgtccggccttgcaatttcg 39514080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 42081674 - 42081743
Alignment:
Q  65 ggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctaga 134  Q
    ||||||||| ||| ||||||||| |   |||||||||| | |||||| ||||||||||||||||||||||    
T  42081674 ggttcgaacccggatcacaacgttcgatcttgcaattttgacatttgccagctgagctaggacttctaga 42081743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 4107392 - 4107324
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgag 120  Q
    |||||| |||| |||||||||| ||||||   |||||| ||||||||||||||||||||| ||| ||||    
T  4107392 ctgtgaggtcccgggttcgaacccgggtcgtgacgtccggccttgcaatttcggcatttgccagttgag 4107324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 29484832 - 29484876
Alignment:
Q  84 acgtccagccttgcaatttcggcatttgtcagctgagctaggact 128  Q
    |||||| ||||||||||||||||||||| ||| ||||||||||||    
T  29484832 acgtccggccttgcaatttcggcatttgccagttgagctaggact 29484876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 34763514 - 34763454
Alignment:
Q  75 cgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||| ||||||  ||||||||||||| |||||  ||| |||||||||||||||||||    
T  34763514 cgggtcacgacgtccgcccttgcaatttcgacattttccagttgagctaggacttctagac 34763454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 11355875 - 11355821
Alignment:
Q  83 aacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    |||||||  ||||||||||||||||||||| || ||| |||| ||||||||||||    
T  11355875 aacgtccgaccttgcaatttcggcatttgttagttgaactagaacttctagactt 11355821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 48146836 - 48146754
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctaga 134  Q
    |||||| |||| |||||||||| |||||||| || ||   |||||||||||| |||||| |||| |||||||| || ||||||    
T  48146836 ctgtgaggtcccgggttcgaacccgggtcacgacatctgaccttgcaatttctgcatttttcagttgagctagaacctctaga 48146754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 15634924 - 15635009
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    ||||||||| | || ||||||  |||||||| ||||||  | || |||||||||||||||  || ||||||| |||||||||||||    
T  15634924 ctgtgaagttccggtttcgaatccgggtcacgacgtccgactttacaatttcggcatttgctagttgagctatgacttctagactt 15635009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 13887242 - 13887174
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttcta 132  Q
    ||||||||||  ||||||| |||||| | ||||||| ||||||||||| ||| |||| || ||||||||    
T  13887242 gggttcgaacctgggtcacgacgtccggtcttgcaagttcggcatttgccagttgagttaagacttcta 13887174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 41183887 - 41183839
Alignment:
Q  63 tgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttg 111  Q
    ||||||||||| | |||||  |||||| |||||||||||||||||||||    
T  41183887 tgggttcgaacccaggtcaagacgtccggccttgcaatttcggcatttg 41183839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 13204040 - 13203957
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  13204040 ctgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 13203957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 21018306 - 21018223
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| ||||||||||||||| |||| ||||||| |||||||| ||| |||||||||||||||||||    
T  21018306 ctgtgaggtcccgggttcgaacccgggtcacaacgtccggcctcgcaattttggcatttgccagttgagctaggacttctagac 21018223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 4824984 - 4825066
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctaga 134  Q
    |||||| |||| ||||| ||||  |||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||    
T  4824984 ctgtgaggtcccgggtttgaacctgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggacttctaga 4825066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 12257432 - 12257354
Alignment:
Q  59 gtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    ||||||||||||||| | ||||||||||||  ||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  12257432 gtcctgggttcgaacccaggtcacaacgtctggccttacaatttcggcatttgccagttgagctaggacttctagactt 12257354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 1191586 - 1191668
Alignment:
Q  53 tgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||| |||| |||||||||| ||| |||| |||||| |||||||||||||| |||||| ||| |||||||||||||||||||    
T  1191586 tgtgaggtcccgggttcgaacccggatcacgacgtccggccttgcaatttcgtcatttgccagttgagctaggacttctagac 1191668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 35317742 - 35317825
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||| | | ||||| |||||||  |||||||||||||||||||| ||| |||||||||||||||||||    
T  35317742 ctgtgaggtcccgggttcgaccccaggtcataacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagac 35317825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 40177682 - 40177624
Alignment:
Q  77 ggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||||||||| |||||||||||||| |||||||||| | |||||||||||||||||    
T  40177682 ggtcacaacgtccggccttgcaatttcgacatttgtcagttaagctaggacttctagac 40177624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 32143470 - 32143531
Alignment:
Q  75 cgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||||||||||||| |||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  32143470 cgggtcacaacgtccggccttgcaattttggcatttgccagttgagctatgacttctagact 32143531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 17465151 - 17465091
Alignment:
Q  75 cgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||  ||||||||||||||||||||||||||||  |||||||||||||||| |||||    
T  17465151 cgggtcatgacgtccagccttgcaatttcggcatttgctagctgagctaggacttttagac 17465091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 9577006 - 9577089
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| || |||||||||||| | |||||  |||||  ||||||||||||| ||||||| ||| |||||||||||||||||||    
T  9577006 ctgtgaggttctgggttcgaacccaggtcatgacgtctggccttgcaatttcagcatttgccagttgagctaggacttctagac 9577089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 21112092 - 21112049
Alignment:
Q  92 ccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  21112092 ccttgcaatttcgacatttgtcagctgagctaggacttctagac 21112049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 27721514 - 27721431
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||| ||| |||||||| ||||||  | |||||||||||||||||  ||| |||||||||||||||||||    
T  27721514 ctgtgaggtcccgggttcaaacccgggtcacgacgtccgactttgcaatttcggcattttccagttgagctaggacttctagac 27721431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 2971054 - 2970984
Alignment:
Q  65 ggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||||| ||||||||||||||   |||| |||||||| ||||| |||| |||||||||||||||||||    
T  2971054 ggttcgaacccgggtcacaacgtctgaccttacaatttcgacatttatcagttgagctaggacttctagac 2970984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 3386957 - 3387028
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||| ||| | || |||||| ||||||||||||||||||||| ||| ||| ||||||||| |||||    
T  3386957 gggttcgaacccggataacgacgtccggccttgcaatttcggcatttgccagttgaactaggacttttagac 3387028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 8734067 - 8734000
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttct 131  Q
    ||||||||||   |||||| |||||| ||||||||||||| ||||||| ||| |||||||||||||||    
T  8734067 gggttcgaacctaggtcacgacgtccggccttgcaatttcagcatttgccagttgagctaggacttct 8734000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 11124710 - 11124652
Alignment:
Q  77 ggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||||| |||||||||||| | |||||| ||| |||||||||||||||||||    
T  11124710 ggtcacgacgtccggccttgcaattttgacatttgccagttgagctaggacttctagac 11124652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 30127960 - 30127894
Alignment:
Q  69 cgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||| |||||||| | |||| ||||||||||||||||||||   || |||||||||||||||||||    
T  30127960 cgaacccgggtcacgatgtccggccttgcaatttcggcatttacaagttgagctaggacttctagac 30127894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 35546016 - 35545933
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| ||||  |||||||| |||| |||| |||| | |  |||||||||||||||||||||| |||| ||| ||||||||||    
T  35546016 ctgtgaggtcccaggttcgaattcggatcacgacgttcggttttgcaatttcggcatttgtcagttgagttagaacttctagac 35545933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 3049099 - 3049173
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctagga 126  Q
    |||||| |||| ||||| ||| |||||||||  ||||| |||||||||||| ||||||||| || ||| ||||||    
T  3049099 ctgtgaggtcccgggtttgaaatcgggtcacggcgtccggccttgcaattttggcatttgtgagttgaactagga 3049173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 17984799 - 17984869
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctaga 134  Q
    |||||||||| || ||||  |||||||  |||||||||||| | ||| |||| ||||||||||||||||||    
T  17984799 gggttcgaacccgagtcaggacgtccaatcttgcaatttcgacctttttcagttgagctaggacttctaga 17984869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 6021068 - 6020995
Alignment:
Q  59 gtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttcta 132  Q
    |||| |||||||||  ||||||||||||||  |||||||||||| | |||||| ||  |||| |||||||||||    
T  6021068 gtcccgggttcgaatccgggtcacaacgtcaggccttgcaattttgacatttgccaattgagttaggacttcta 6020995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 23262605 - 23262568
Alignment:
Q  78 gtcacaacgtccagccttgcaatttcggcatttgtcag 115  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  23262605 gtcacaacatccagccttgcaatttcggcatttatcag 23262568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 4444928 - 4444972
Alignment:
Q  87 tccagccttgcaatttcggcatttgtcagctgagctaggacttct 131  Q
    ||||||||  ||||||||||||||| ||| |||||||||||||||    
T  4444928 tccagcctaacaatttcggcatttgccagttgagctaggacttct 4444972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 1778922 - 1778851
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||| |||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  1778922 gggttcgaacccgggtcacaatgtccggccttgcaatttcggcatttgtcagttgagctaggacttctagac 1778851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 28844574 - 28844504
Alignment:
Q  65 ggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||    
T  28844574 ggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgtcagttgagctagaacttctagac 28844504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 43247695 - 43247779
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||| |||| |||||||||| | ||||||||||||| |||||||||||| |||||||| ||| ||||||||||||||||||||    
T  43247695 ctgtgaggtcccgggttcgaacccaggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggacttctagact 43247779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 7824499 - 7824582
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  7824499 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 7824582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 29689527 - 29689610
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  29689527 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 29689610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 54151726 - 54151809
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  54151726 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 54151809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 4601496 - 4601424
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  4601496 gggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagact 4601424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 33334691 - 33334608
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| || ||||||||| ||||||||||||| || ||||||||||||||||||  || |||||||||||||||||||    
T  33334691 ctgtgaggtcccggattcgaactcaggtcacaacgtccggctttgcaatttcggcatttgcaagttgagctaggacttctagac 33334608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 54158349 - 54158266
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| ||| |||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  54158349 ctgtgaggtcccgggttcgaacccggatcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 54158266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 35461536 - 35461608
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||||||| ||| |||||||||||  |||||||||||||||||||| ||| |||||||| |||||||||||    
T  35461536 gggttcgaacccggatcacaacgtccgaccttgcaatttcggcatttgccagttgagctagaacttctagact 35461608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 51665977 - 51666053
Alignment:
Q  59 gtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||| |||||||||| | |||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  51665977 gtcccgggttcgaacccaggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 51666053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 55018079 - 55018162
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||| |||||| |||||||||||| | |||||| ||| |||| ||||||||||||||    
T  55018079 ctgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaattttgacatttgccagttgagttaggacttctagac 55018162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 29750690 - 29750621
Alignment:
Q  66 gttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||  |||||||| |||||||||||||||||||||||||||| ||| |||| ||| ||||||||||    
T  29750690 gttcgaatccgggtcacgacgtccagccttgcaatttcggcatttgccagttgagttagtacttctagac 29750621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 3113052 - 3113111
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagcta 123  Q
    |||||||||||||||| || |||||| ||||||||||||||||||||| ||| |||||||    
T  3113052 gggttcgaactcgggttacgacgtccggccttgcaatttcggcatttgccagttgagcta 3113111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 31255477 - 31255406
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||| |||||||| ||||||||| ||  ||||||| |||||||||| |||| ||||||||||||||    
T  31255477 gggttcgaacccgggtcacgacgtccagctttataatttcgacatttgtcagttgagttaggacttctagac 31255406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 42392851 - 42392934
Alignment:
Q  53 tgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||| |||| |||||||| | ||| |||  ||||||  |||||||||||||||||||| ||| ||||||||||||||||||||    
T  42392851 tgtgaggtcccgggttcgagcccggatcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagact 42392934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 36229039 - 36229110
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagcta 123  Q
    |||||| |||| |||||||||| ||| |||  |||||| ||||||||||||||||||||| ||| |||||||    
T  36229039 ctgtgaggtcccgggttcgaacccggatcatgacgtccggccttgcaatttcggcatttgccagttgagcta 36229110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 51112521 - 51112588
Alignment:
Q  64 gggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttct 131  Q
    |||||||||| | |||||  |||||| |||| |||||||||||||||| ||| |||||||||||||||    
T  51112521 gggttcgaaccccggtcatgacgtccggcctagcaatttcggcatttgccagttgagctaggacttct 51112588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 52500908 - 52500837
Alignment:
Q  65 ggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||||||| ||| |||  |||||| ||||| |||||||| |||||| ||| ||||||||||||||||||||    
T  52500908 ggttcgaacccggatcatgacgtccggccttacaatttcgacatttgccagttgagctaggacttctagact 52500837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 41377665 - 41377584
Alignment:
Q  54 gtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||| |||| ||||||||||  || |||  |||||| ||||| |||||| |||||||| ||| |||||||||||||||||||    
T  41377665 gtgaggtcccgggttcgaacctggatcatgacgtccggccttacaattttggcatttgccagttgagctaggacttctagac 41377584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 28458707 - 28458663
Alignment:
Q  91 gccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||    
T  28458707 gccttgcaatttcgacatttgtcagttgagttaggacttctagac 28458663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 50729567 - 50729523
Alignment:
Q  92 ccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||| ||||||||||||||||||| |||||||| |||||||||||    
T  50729567 ccttacaatttcggcatttgtcagttgagctagaacttctagact 50729523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 50783282 - 50783326
Alignment:
Q  92 ccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||| ||||||||||||||||||| |||||||| |||||||||||    
T  50783282 ccttacaatttcggcatttgtcagttgagctagaacttctagact 50783326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 9349721 - 9349780
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttg 111  Q
    |||||| |||| |||||||||| ||| |||| ||||||  ||||||||||||||||||||    
T  9349721 ctgtgaggtcccgggttcgaacccggatcacgacgtccgaccttgcaatttcggcatttg 9349780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 5998871 - 5998905
Alignment:
Q  97 caatttcggcatttgtcagctgagctaggacttct 131  Q
    ||||||||||||||||||| |||||||||||||||    
T  5998871 caatttcggcatttgtcagatgagctaggacttct 5998905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 14868935 - 14868979
Alignment:
Q  87 tccagccttgcaatttcggcatttgtcagctgagctaggacttct 131  Q
    ||||||||  ||||||||||||||| ||| |||||||||||||||    
T  14868935 tccagcctaacaatttcggcatttgccagttgagctaggacttct 14868979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 45686096 - 45686152
Alignment:
Q  76 gggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttcta 132  Q
    ||||||| |||||| ||||| |||||||||||||||  || ||||||| ||||||||    
T  45686096 gggtcacgacgtccggcctttcaatttcggcatttgctagttgagctaagacttcta 45686152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1348 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 907 - 990
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| |||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  907 ctgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 14580 - 14493
Alignment:
Q  50 ctctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagactt 137  Q
    |||||||| |||| |||||||||| ||| |||| |||||| |||||||||||||| ||||||||||||| |||||||||| |||||||    
T  14580 ctctgtgaggtcccgggttcgaacccggatcacgacgtccggccttgcaatttcgacatttgtcagctgtgctaggacttatagactt 14493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 13996 - 14079
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| ||| ||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  13996 ctgtgaggtcccgggttcgaacccggatcacaacgtccggccttgcaatttcggtatttgccagttgagctaggacttctagac 14079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 19676 - 19759
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||||| |||| |||||||||| ||| ||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  19676 ctgtgaggtcccgggttcgaacccggatcacaacgtccggccttgcaatttcggtatttgccagttgagctaggacttctagac 19759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 10025 - 10101
Alignment:
Q  59 gtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||| |||||||||| ||||| || |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  10025 gtcccgggttcgaacccgggttacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 10101  T

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Target: scaffold0038 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 114334 - 114251
Alignment:
Q  53 tgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||| |||| |||||||||| ||| |||  |||||| ||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  114334 tgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgccagttgagctaggacttctagact 114251  T

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Target: scaffold0067 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 34894 - 34817
Alignment:
Q  59 gtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    ||||||| ||||||| |  ||||| |||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  34894 gtcctggattcgaacccatgtcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctggact 34817  T

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Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 22246 - 22174
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctag 124  Q
    |||||| |||| ||| |||||| |||||||| |||||| ||||| ||||||||||||||||||| ||||||||    
T  22246 ctgtgaggtcccgggctcgaacccgggtcacgacgtccggccttacaatttcggcatttgtcagttgagctag 22174  T

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Target: scaffold0495 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 3263 - 3339
Alignment:
Q  59 gtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagac 135  Q
    |||| |||||||||| || ||||| | ||||||| ||| |||||||| ||||| ||| |||||||||||||||||||    
T  3263 gtcccgggttcgaacccgtgtcacgaagtccagctttgtaatttcggaatttgccagttgagctaggacttctagac 3339  T

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Target: scaffold0352 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 8988 - 9072
Alignment:
Q  52 ctgtgaagtcctgggttcgaactcgggtcacaacgtccagccttgcaatttcggcatttgtcagctgagctaggacttctagact 136  Q
    |||||| ||||| ||||||||| ||  ||| ||||||| ||||| ||||||||||||||  ||| |||||||| |||||||||||    
T  8988 ctgtgaggtcctaggttcgaacccgaatcataacgtcccgccttacaatttcggcatttaccagttgagctagaacttctagact 9072  T

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