View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13787_high_7 (Length: 531)
Name: NF13787_high_7
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13787_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 40416091 - 40415578
Alignment:
| Q |
1 |
aaaccatccggttttaaggggaatgggattttagtgaatatagaactcgggaggtaaataaagtttaattaagattgtttcaaccagaattcgaacttaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40416091 |
aaaccatccggttttcaggggaatgggattttagtgaatatagaattcgggaggtaaataaagtttaattaagattgtttcaaccagaattcaaacttaa |
40415992 |
T |
|
| Q |
101 |
tttctctggaacaattcatcccaactatctttgatggtctcannnnnnnatataaaatcttaaatttcatgatataatgttgcaggtaattagcatggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40415991 |
tttctctggaacaattcatcccaactatctttgatggtctcatttttttatataaaatcttaaatttcatgatataatgttgcaggtaattagcatggag |
40415892 |
T |
|
| Q |
201 |
tggggaaacttcaattcctctcatgttcctctaacatcgtttgacactattttagatgctgaaagctcaaatcctggaagtggggtatattataaactaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40415891 |
tggggaaacttcaattcctctcatgttcctctaacatcgtttgacactattttagatgctgaaagctcaaattctggaagtggggtatattataaactaa |
40415792 |
T |
|
| Q |
301 |
attcaatattgataatttatcttgatatctagaattgatccctgaa--nnnnnnnnnccttcccttttctcttagatttttgaaaagcttatttcaggaa |
398 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40415791 |
attcactattgataatttatcttgatatctagaattgatccctgaatttttttttttccttcctttttctcttagatttttgaaaagcttatttcaggaa |
40415692 |
T |
|
| Q |
399 |
tgtatttaggagaaattttgagacacgttctgttgaagatggcacaagaaacagctctatttggaggcagcgtgcctccaaaattgatgactccatactc |
498 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40415691 |
tgtatttaggagaaattgtgagacacgttctgttgaagatggcacaagaaacagccctatttggaggcagcgtgcctccaaaattgatgactccatactc |
40415592 |
T |
|
| Q |
499 |
actatggtacgtgg |
512 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
40415591 |
actaaggtacgtgg |
40415578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University