View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13787_high_9 (Length: 458)
Name: NF13787_high_9
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13787_high_9 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 13 - 439
Target Start/End: Complemental strand, 32465495 - 32465062
Alignment:
| Q |
13 |
attatactctctcactctctccctcttcatctcaaaaatgcataaatcattaatgggaa-------gcatgttgcatgattaaatgcgacttggaagtag |
105 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32465495 |
attatactctctcattctctccctcttcatctcaaaaatgcataaatcattaatgggaattgggaagcatgttgcatgattaaatgcgacttggaagtag |
32465396 |
T |
|
| Q |
106 |
tagtggtggtagtattggcaaggaccccatagccctagcaaccctcctaagcacatgtttttgaatctttccggttgaagtctttggcaactcttcctta |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
32465395 |
tagtggtggtagtattggcaaggaccccatagccctagcaacccttctaagcacatgtttttgaatctttccagttgaagtctttggcaactcctcctta |
32465296 |
T |
|
| Q |
206 |
aacacaaccgtcttaggcaccataaaatgtggcaacttctctctacaaaactctttaacctccttctccgtcggtatctcctcttccttcaactcgtcat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32465295 |
aacacaaccgtcttaggcaccataaaatgtggcaacttctctctacaaaactccttaacctccttctccgtcggtatctcctcttccttcaactcgtcat |
32465196 |
T |
|
| Q |
306 |
tcaaactcacaaacgcacacggcgtctctccccaaaactcatctggcctcgccaccaccgccgcctccttaaccgccggatgcatatacaaaacagcctc |
405 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32465195 |
tcaaactcacaaatgcacacggcgtctcgccccaaaactcatccggcctcgccaccaccgccgcctccttaaccgccggatgcatatacaaaacagcctc |
32465096 |
T |
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| Q |
406 |
aacctccacactactcatattctctccaccactt |
439 |
Q |
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| T |
32465095 |
aacctccacactactcatattctctccaccactt |
32465062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 141 - 439
Target Start/End: Original strand, 32455775 - 32456073
Alignment:
| Q |
141 |
tagcaaccctcctaagcacatgtttttgaatctttccggttgaagtctttggcaactcttccttaaacacaaccgtcttaggcaccataaaatgtggcaa |
240 |
Q |
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|||||||| | ||||||||||||||||||| |||||||||||| ||||||||||| || | | ||||||||| || ||||||| ||||||||| ||||| |
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| T |
32455775 |
tagcaacctttctaagcacatgtttttgaacctttccggttgatgtctttggcaattccttcataaacacaattgttttaggcatcataaaatgcggcaa |
32455874 |
T |
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| Q |
241 |
cttctctctacaaaactctttaacctccttctccgtcggtatctcctcttccttcaactcgtcattcaaactcacaaacgcacacggcgtctctccccaa |
340 |
Q |
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||||||| |||||||||| |||| ||| || || ||||| || || | | |||||| || || ||||||||||||||| ||||||||||||| |||||| |
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| T |
32455875 |
cttctctttacaaaactccttaatctcattatcagtcggaatatcattcttcttcaattcatctttcaaactcacaaacccacacggcgtctccccccaa |
32455974 |
T |
|
| Q |
341 |
aactcatctggcctcgccaccaccgccgcctccttaaccgccggatgcatatacaaaacagcctcaacctccacactactcatattctctccaccactt |
439 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
32455975 |
aaatcatctggtctcgccaccaccgccgcctccttaaccgccgaatgcatatacaaaaccccctcaacctccacactactcatattctctccgccactt |
32456073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 167 - 438
Target Start/End: Original strand, 32471537 - 32471808
Alignment:
| Q |
167 |
tgaatctttccggttgaagtctttggcaactcttccttaaacacaaccgtcttaggcaccataaaatgtggcaacttctctctacaaaactctttaacct |
266 |
Q |
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||||| || ||||| ||||||||||| | ||| || |||||||| ||||| || || |||||| |||| ||||| |||| ||||| |||| | || |
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| T |
32471537 |
tgaattttcccggtagaagtctttggaagctcatctttaaacaccaccgtttttggaaccatataatgcggcaaattcttcctacagtactcaactatct |
32471636 |
T |
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| Q |
267 |
ccttctccgtcggtatctcctcttccttcaactcgtcattcaaactcacaaacgcacacggcgtctctccccaaaactcatctggcctcgccaccaccgc |
366 |
Q |
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| T |
32471637 |
ctttctccgttggtatatccctttccttcaacccttctttcaaactcacaaaagcacacggtgtctccccccaaaactcatcctccctcgccaccaccgc |
32471736 |
T |
|
| Q |
367 |
cgcctccttaaccgccggatgcatatacaaaacagcctcaacctccacactactcatattctctccaccact |
438 |
Q |
| |
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|||||| || ||||||||||| ||||||||| | |||||||||||||||||||| |||||| |||||||| |
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| T |
32471737 |
cgcctcattcaccgccggatgtccatacaaaaccgactcaacctccacactactcaaattctcaccaccact |
32471808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 141 - 439
Target Start/End: Complemental strand, 24790 - 24492
Alignment:
| Q |
141 |
tagcaaccctcctaagcacatgtttttgaatctttccggttgaagtctttggcaactcttccttaaacacaaccgtcttaggcaccataaaatgtggcaa |
240 |
Q |
| |
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|||||||| | |||||||||||||||| || |||||||||||||||||||||||| || | | | | ||||| || |||||| ||||||||||||||| |
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| T |
24790 |
tagcaacctttctaagcacatgttttttaacctttccggttgaagtctttggcaattccttcatgatcacaattgttttaggcgtcataaaatgtggcaa |
24691 |
T |
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| Q |
241 |
cttctctctacaaaactctttaacctccttctccgtcggtatctcctcttccttcaactcgtcattcaaactcacaaacgcacacggcgtctctccccaa |
340 |
Q |
| |
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|| ||| |||||||||| |||| |||| | || || || || || | ||| ||||| || || |||||||||||||||||||||||||||||||||||| |
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| T |
24690 |
ctcctccctacaaaacttcttaatctccatgtcagttggaatatcgttttcattcaattcatccttcaaactcacaaacgcacacggcgtctctccccaa |
24591 |
T |
|
| Q |
341 |
aactcatctggcctcgccaccaccgccgcctccttaaccgccggatgcatatacaaaacagcctcaacctccacactactcatattctctccaccactt |
439 |
Q |
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|| ||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||| |
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| T |
24590 |
aaatcatccggcctagccaccaccgccgcctccttaaccgcgggatgcatgtacaaaacaccctcaacttccacactactcatattctccccaccactt |
24492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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