View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13787_low_1 (Length: 844)

Name: NF13787_low_1
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13787_low_1
NF13787_low_1
[»] chr2 (5 HSPs)
chr2 (141-675)||(16259164-16259698)
chr2 (745-825)||(16259015-16259094)
chr2 (9-64)||(16259751-16259806)
chr2 (103-179)||(9496039-9496115)
chr2 (132-173)||(19336932-19336973)
[»] chr7 (4 HSPs)
chr7 (103-173)||(9210743-9210813)
chr7 (132-174)||(36101815-36101857)
chr7 (132-173)||(25891090-25891131)
chr7 (132-173)||(28627972-28628013)
[»] chr5 (5 HSPs)
chr5 (103-173)||(1275437-1275507)
chr5 (103-173)||(418073-418143)
chr5 (132-174)||(12534414-12534456)
chr5 (103-172)||(2090586-2090655)
chr5 (131-172)||(39668904-39668945)
[»] chr4 (5 HSPs)
chr4 (103-173)||(35690444-35690514)
chr4 (103-173)||(51421903-51421973)
chr4 (132-173)||(51438647-51438688)
chr4 (103-175)||(39708606-39708678)
chr4 (92-179)||(4548184-4548271)
[»] chr1 (5 HSPs)
chr1 (103-173)||(37462915-37462984)
chr1 (103-173)||(32404565-32404635)
chr1 (132-173)||(2544795-2544836)
chr1 (132-173)||(27072526-27072567)
chr1 (132-173)||(28090733-28090774)
[»] scaffold0050 (1 HSPs)
scaffold0050 (132-173)||(58265-58306)
[»] chr6 (3 HSPs)
chr6 (132-173)||(31818733-31818774)
chr6 (132-173)||(34544-34585)
chr6 (132-173)||(8364758-8364799)
[»] chr8 (6 HSPs)
chr8 (103-173)||(29520822-29520892)
chr8 (132-173)||(490537-490578)
chr8 (134-175)||(26904944-26904985)
chr8 (132-173)||(35914640-35914681)
chr8 (132-173)||(43904704-43904745)
chr8 (112-173)||(45419417-45419478)
[»] chr3 (2 HSPs)
chr3 (92-173)||(28245599-28245680)
chr3 (132-173)||(39208810-39208851)


Alignment Details
Target: chr2 (Bit Score: 515; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 141 - 675
Target Start/End: Complemental strand, 16259698 - 16259164
Alignment:
Q  141 atacaacattatgtcgtaatttgatccatgtagtcaaccacacacttttcttatatttattattccatagataaggattgggagctattcatttagggtc 240  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16259698 atacaacattatatcgtaatttgatccatgtagccaaccacacacttttcttatatttattattccatagataaggattgggagctattcatttagggtc 16259599  T
Q  241 atacaaacaaatgcaataggttggatcagggtcaagaatatgaagacatttccctttaatatttttgtattcatgtgcgtaatagttaacgcaattttca 340  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16259598 atacaaacaaatgcaataggttggatcagggtcaaggatatgaagacatttccctttaatatttttgtattcatgtgcgtaatagttaacgcaattttca 16259499  T
Q  341 ttgcaacagtttagatcacaattttcacaaaggccaaatccaacactgcaagttcgtattcctcgagtttttgggggtggcgtattgtaaaaacaagtgc 440  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16259498 ttgcaacagtttagatcacaattttcgcaaaggccaaatccaacactgcaagttcgtattcctcgagtttttgggggtggcgtattgtaaaaacaagtgc 16259399  T
Q  441 ataggttgaagtaacgacatgatccggttggacttcctggaaggttattacaatatttgaggcaatccattgctccacagttacccacaattcttgagca 540  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16259398 ataagttgaagtaacgacatgatccggttggacttcctggaaggttattacaatatttgaggcaatccattgctccacagttacccacaattcttgagca 16259299  T
Q  541 tgcttctactaggattgattgcactgtgctcccacacaaattagggcaagaaaaaataaacaatgaaacgaaaattagttaggtctaatgggatcaaaat 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16259298 tgcttctactaggattgattgcactgtgctcccacacaaattagggcaagaaaaaataaacaatgaaacgaaaattagttaggtctaatgggatcaaaat 16259199  T
Q  641 tgtcgacaatatgtggttgttggatcaaacggtcc 675  Q
    |||||||||||||||||||||||||||||||||||    
T  16259198 tgtcgacaatatgtggttgttggatcaaacggtcc 16259164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 745 - 825
Target Start/End: Complemental strand, 16259094 - 16259015
Alignment:
Q  745 tcttgaatatactgaatacgtgaattcgtcaaacaatactatgggaaaaatctgaatttgatatagagcatgtggttaacg 825  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16259094 tcttgaatatactgaatacgtgaattcgtcaaacaatactatggg-aaaatctgaatttgatatagagcatgtggttaacg 16259015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 16259806 - 16259751
Alignment:
Q  9 gtcgaagaatatatcaaatggataagagtcttatcaaaagatgtagatgaagacct 64  Q
    |||||||| |||||||||| ||||||||| | ||||||||||||||||||||||||    
T  16259806 gtcgaagagtatatcaaatagataagagtttgatcaaaagatgtagatgaagacct 16259751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 9496039 - 9496115
Alignment:
Q  103 tttagaggttaatcagtttaatccaacattggtttataatacaacattatgtcgtaatttgatccatgtagtcaacc 179  Q
    ||||||||||||| ||||  ||||||   |||||||| ||| ||||||||| ||||||||||||||||||| |||||    
T  9496039 tttagaggttaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccaacc 9496115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 19336973 - 19336932
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||| ||| ||||||||| |||||||||||||||||||    
T  19336973 tggtttatgatagaacattatggcgtaatttgatccatgtag 19336932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 9210813 - 9210743
Alignment:
Q  103 tttagaggttaatcagtttaatccaacattggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    ||||||||||||| ||||  ||||||   |||||||| ||||||||||||| |||||||||||||||||||    
T  9210813 tttagaggttaatgagttggatccaaatatggtttatgatacaacattatggcgtaatttgatccatgtag 9210743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 36101857 - 36101815
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtagt 174  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||    
T  36101857 tggtttatgatagaacattatgacgtaatttgatccatgtagt 36101815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 25891090 - 25891131
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||||||| |||||||||  ||||||||||||||||||    
T  25891090 tggtttataatagaacattatggtgtaatttgatccatgtag 25891131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 28628013 - 28627972
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||| ||| ||||||||| |||||||||||||||||||    
T  28628013 tggtttatgatagaacattatggcgtaatttgatccatgtag 28627972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 1275437 - 1275507
Alignment:
Q  103 tttagaggttaatcagtttaatccaacattggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||||||||||||| |||||||  ||||| | | ||| ||||||||| ||| |||||||||||||||    
T  1275437 tttagaggttaatcagttgaatccaaatttggtgtttgatagaacattatgacgtcatttgatccatgtag 1275507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 418143 - 418073
Alignment:
Q  103 tttagaggttaatcagtttaatccaacattggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    ||||||| ||||| ||||  ||||||   |||||||| ||| ||||||||| |||||||||||||||||||    
T  418143 tttagagattaatgagttggatccaaatgtggtttatgatagaacattatggcgtaatttgatccatgtag 418073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 12534414 - 12534456
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtagt 174  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||    
T  12534414 tggtttataatagaacattatggcgtaatttgatccatttagt 12534456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 2090586 - 2090655
Alignment:
Q  103 tttagaggttaatcagtttaatccaacattggtttataatacaacattatgtcgtaatttgatccatgta 172  Q
    ||||||||||||| || || ||||||   | |||||| || |||||||||| ||||||||||||||||||    
T  2090586 tttagaggttaatgagcttgatccaaatatagtttatgatccaacattatggcgtaatttgatccatgta 2090655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 39668904 - 39668945
Alignment:
Q  131 ttggtttataatacaacattatgtcgtaatttgatccatgta 172  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||    
T  39668904 ttggtttatgatagaacattatggcgtaatttgatccatgta 39668945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 35690444 - 35690514
Alignment:
Q  103 tttagaggttaatcagtttaatccaacattggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    ||||||||||||| ||||| ||||||    ||||||| ||| ||||||||| |||||||||||||||||||    
T  35690444 tttagaggttaatgagtttgatccaatcagggtttatgatagaacattatggcgtaatttgatccatgtag 35690514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 51421903 - 51421973
Alignment:
Q  103 tttagaggttaatcagtttaatccaacattggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    ||||||||||||| | ||  |||||| | |||||||| ||| ||||||||| |||||||||||||||||||    
T  51421903 tttagaggttaatgaattggatccaaaaatggtttatgatagaacattatgacgtaatttgatccatgtag 51421973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 51438647 - 51438688
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  51438647 tggtttataatataacattatggcgtaatttgatccatgtag 51438688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 39708606 - 39708678
Alignment:
Q  103 tttagaggttaatcagtttaatccaacattggtttataatacaacattatgtcgtaatttgatccatgtagtc 175  Q
    ||||||||| ||| ||||  ||||||   |||||||| ||| |||| ||||||||||||||||||||||||||    
T  39708606 tttagaggtcaatgagttggatccaaatatggtttatgatagaacactatgtcgtaatttgatccatgtagtc 39708678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 4548184 - 4548271
Alignment:
Q  92 attagaaattttttagaggttaatcagtttaatccaacattggtttataatacaacattatgtcgtaatttgatccatgtagtcaacc 179  Q
    ||||||||| |||||||||| ||| ||||  ||| ||  ||||||||| ||| |||| || | ||||||||||||||||||| |||||    
T  4548184 attagaaatattttagaggtcaataagttggatctaaatttggtttatgatagaacactaaggcgtaatttgatccatgtagccaacc 4548271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 37462984 - 37462915
Alignment:
Q  103 tttagaggttaatcagtttaatccaacattggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    ||||||||||||| ||||| ||| || || ||||||| ||| ||||||||| |||||||||||||||||||    
T  37462984 tttagaggttaatgagtttgatcaaatat-ggtttatcatagaacattatggcgtaatttgatccatgtag 37462915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 32404635 - 32404565
Alignment:
Q  103 tttagaggttaatcagtttaatccaacattggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    ||||||| ||||| |||| |||||||   |||||||| ||| ||||| ||| |||||||||||||||||||    
T  32404635 tttagagattaatgagttaaatccaaacatggtttatgatataacataatggcgtaatttgatccatgtag 32404565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 2544795 - 2544836
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||||||| ||||||||| | |||||||||||||||||    
T  2544795 tggtttataatagaacattatggcataatttgatccatgtag 2544836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 27072567 - 27072526
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||| ||| ||||||||| |||||||||||||||||||    
T  27072567 tggtttatgatagaacattatggcgtaatttgatccatgtag 27072526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 28090774 - 28090733
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||| ||| ||||||||| |||||||||||||||||||    
T  28090774 tggtttatgatagaacattatggcgtaatttgatccatgtag 28090733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 58306 - 58265
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  58306 tggtttatgatagaacattatgtcgtaatttgatccatgtag 58265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 31818733 - 31818774
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  31818733 tggtttatgatagaacattatgtcgtaatttgatccatgtag 31818774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 34585 - 34544
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||| ||| ||||||||| |||||||||||||||||||    
T  34585 tggtttatgatagaacattatggcgtaatttgatccatgtag 34544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 8364758 - 8364799
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||| ||| ||||||||| |||||||||||||||||||    
T  8364758 tggtttatgatagaacattatggcgtaatttgatccatgtag 8364799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 29520822 - 29520892
Alignment:
Q  103 tttagaggttaatcagtttaatccaacattggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    ||||||| ||||| ||||  ||||||   |||||||| ||| ||||||||| |||||||||||||||||||    
T  29520822 tttagagattaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtag 29520892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 490537 - 490578
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||| ||| ||||||||| |||||||||||||||||||    
T  490537 tggtttatgatagaacattatggcgtaatttgatccatgtag 490578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 26904985 - 26904944
Alignment:
Q  134 gtttataatacaacattatgtcgtaatttgatccatgtagtc 175  Q
    |||||||||| |||| |||||||||||||||||||| |||||    
T  26904985 gtttataataaaacactatgtcgtaatttgatccatatagtc 26904944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 35914681 - 35914640
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||| ||| ||||||||| |||||||||||||||||||    
T  35914681 tggtttatgatagaacattatggcgtaatttgatccatgtag 35914640  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 43904745 - 43904704
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||| ||| ||||||||| |||||||||||||||||||    
T  43904745 tggtttatgatagaacattatggcgtaatttgatccatgtag 43904704  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 45419417 - 45419478
Alignment:
Q  112 taatcagtttaatccaacattggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||| ||||| ||||||  ||||||||| ||| |||||||||  ||||||||||||||||||    
T  45419417 taatgagtttgatccaaatttggtttatgatagaacattatggtgtaatttgatccatgtag 45419478  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 28245599 - 28245680
Alignment:
Q  92 attagaaattttttagaggttaatcagtttaatccaacattggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||||  ||||||||| ||| ||||  ||||||  ||||| ||||||| |||| |||| ||| |||||||||||||||    
T  28245599 attagaaatgatttagaggtcaatgagttggatccaaatttggtgtataatagaacactatgacgtcatttgatccatgtag 28245680  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 39208810 - 39208851
Alignment:
Q  132 tggtttataatacaacattatgtcgtaatttgatccatgtag 173  Q
    |||||||| ||| ||||||||| |||||||||||||||||||    
T  39208810 tggtttatgatagaacattatgacgtaatttgatccatgtag 39208851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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