View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13787_low_15 (Length: 392)
Name: NF13787_low_15
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13787_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 43003656 - 43003273
Alignment:
| Q |
1 |
cccttcttttgttcaggaactttaagcaagagtccataacgacgactcaacaaccaccgtgcttgagacatgtcttgaggcagcttgcagcgtgttagag |
100 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43003656 |
cccttcttttgttcaggaacttcaagcaagagtccgtaacgacgactcaacaaccaccgtgcttgagacatgtcttgaggcagcttgcagcgtgttagag |
43003557 |
T |
|
| Q |
101 |
aacgaaccaaagatgctagaacaagaggcacatactcctctaggtgaactgaaatcaaagaccagaactgaactattgaacaatttggaaggtctttata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43003556 |
aacgaaccaaagatgctagaacaagaggcacatactcctctaggtgaactgaaatcaaagaccagcactgaactattgaacaatttggaaggtctttata |
43003457 |
T |
|
| Q |
201 |
aatcaaataatgaaagagggattggaacgttttctgtttgatgaatcaaatatggctatctactccactgccaacaaga---attttgtcgttaaggagc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43003456 |
aatcaaataatgaaagagggattggaacgttttctgtttgatgaatcaaatatggctatctactccactgccaacaagaaatattttgtcgttaaggagc |
43003357 |
T |
|
| Q |
298 |
tgaggatgctcttggaagcatactactttcagattctcagtactctcaacaaactctccaaggttcctttctagttcctttttc |
381 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43003356 |
tgaggatgctcttggaagcatgctactttcagattctcagtactctcaacaaactctccaaggtacctttctagttcctttttc |
43003273 |
T |
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