View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13787_low_16 (Length: 383)
Name: NF13787_low_16
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13787_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 48527660 - 48527430
Alignment:
| Q |
1 |
ctcatggattctaaacgtgtatattgggcaatcattgtagcatggcttactttgttccacggaagcatgatacttgtccaaggtcaatttaattataaag |
100 |
Q |
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| T |
48527660 |
ctcatggattctaaaagtgtatattgggcaatcattgtagcatggcttactttgttccaaggaagcatgatacttgtccagggtcaatttaattataaag |
48527561 |
T |
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| Q |
101 |
aggctctcacacaatcccttatattcttagaggcacaaagatcaggaaaactccctccaaataacagggttccttggagaggagactcagctgtcgacga |
200 |
Q |
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| T |
48527560 |
aggctctcacaaaatcccttatattcttagaggcacaaagatcaggaaaactccctccaaataacagggttccttggagaggagactcagctgtcgacga |
48527461 |
T |
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| Q |
201 |
cggcaaactcgctaatgtatctttctttttc |
231 |
Q |
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| T |
48527460 |
cggcaaactcgctaatgtatctttatttttc |
48527430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 234 - 366
Target Start/End: Complemental strand, 48527288 - 48527156
Alignment:
| Q |
234 |
tctaacatattttaatcatgaaagatacattaaatgaataatttgggttaatgtgcataattttattgaattgaatgtaggtggacctatctgggggata |
333 |
Q |
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| T |
48527288 |
tctaacatattttaatcatgaaagatacattaaatgaataatttgggttaatgtgcataattttattgaattgaatgtaggtggacctatctgggggata |
48527189 |
T |
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| Q |
334 |
ttatgatgcaggagataatgtgaaatatgggct |
366 |
Q |
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| T |
48527188 |
ttatgatgcaggagataatgtgaaatatgggct |
48527156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 7222969 - 7222740
Alignment:
| Q |
2 |
tcatggattctaaacgtgtatattgggcaatcattgtagcatggcttactttgttccacggaagcatgatacttgtccaaggtcaatttaattataaaga |
101 |
Q |
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| T |
7222969 |
tcatggataataaaagagtatatttggccatcattgcaacatgtcttgctttgttccaaggaaacatgatacttgttaagggtcaatttaactacaagga |
7222870 |
T |
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| Q |
102 |
ggctctcacacaatcccttatattcttagaggcacaaagatcaggaaaactccctccaaataacagggttccttggagaggagactcagctgtcgacgac |
201 |
Q |
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| T |
7222869 |
agctctcacaaaatctctcatcttcttagaggcgcaaagatcagggaaactccctcccagtaatagggtcccttggagaggagactcagcagtggatgat |
7222770 |
T |
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| Q |
202 |
ggcaaactcgctaatgtatctttctttttc |
231 |
Q |
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| T |
7222769 |
ggaaaactcgataatgtatgtttctttttc |
7222740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 366
Target Start/End: Complemental strand, 7222612 - 7222541
Alignment:
| Q |
293 |
attttattgaattgaatgtaggtggacctatctgggggatattatgatgcaggagataatgtgaaatatgggct |
366 |
Q |
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| T |
7222612 |
attttattgaattgaat--aggttgacctatcaggaggatattatgatgccggggacaatgtgaaatatgggct |
7222541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 50303292 - 50303500
Alignment:
| Q |
19 |
gtatattgggcaatcattgtagcatggcttactttgttccacggaagcatgatacttgtccaaggtcaatttaattataaagaggctctcacacaatccc |
118 |
Q |
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|||||||||||| |||||| | ||| |||||||| ||||| |||||| |||||||||| | |||||||||||||| ||||| |||| | | |||| | |
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| T |
50303292 |
gtatattgggca-tcattgcaacattacttactttattccaaggaagcgtgatacttgttaagggtcaatttaattacaaagaagctccaataaaatctc |
50303390 |
T |
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| Q |
119 |
ttatattcttagaggcacaaagatcaggaaaactccctccaaataacagggttccttggagaggagactcagctgtcgacgacggcaaactcgctaatgt |
218 |
Q |
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|||| |||||||||||||| || ||||| || || |||| |||||| ||||| |||| | |||||| ||||| || | || || |||||| ||||||| |
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| T |
50303391 |
ttattttcttagaggcacagaggtcagggaaccttcctctaaataatagggtatcttgaaaaggagattcagcactcaatgatggaaaactcactaatgt |
50303490 |
T |
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| Q |
219 |
atctttcttt |
228 |
Q |
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| T |
50303491 |
ctatttcttt |
50303500 |
T |
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