View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13787_low_19 (Length: 289)
Name: NF13787_low_19
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13787_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 41241013 - 41240787
Alignment:
| Q |
1 |
gtcattaaacaataacaacaagaatctaattccacacacataaaattaaaatcgacttcaaagatatcaactctaaaactacatgtctcaagaagccata |
100 |
Q |
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| T |
41241013 |
gtcattaaacaataacaacaagaatctaattccacacacataaaattaaaatcgacttcaaagatatcaactctaaaactacatgtctcacgaagccata |
41240914 |
T |
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| Q |
101 |
tgaacgcagagttatatatgtctgacttaataacacacctaaaatcatcgtactttgatgaagtatttgatcatccactaactaatatagcttcatggat |
200 |
Q |
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| T |
41240913 |
tgaacgcagagtcatgtatgtttaacttaataacacacctaaaatcatcgtactttgatgaagtatttgatcatccactaactaatatagcttcatggat |
41240814 |
T |
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| Q |
201 |
gatggatctacaatccatgttgatctc |
227 |
Q |
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| T |
41240813 |
gatggatctacaatccatgttgatctc |
41240787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 41246816 - 41246998
Alignment:
| Q |
22 |
gaatctaattccacacacataaaattaaaatcgacttcaaagatatcaactctaaaactacatgtctcaagaagccatatg--aacgcagagttatatat |
119 |
Q |
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||||||| ||||||||||||||||| |||| |||||| |||||| |||| |||||||| ||||||||||||| ||||| || || | | || ||| |
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| T |
41246816 |
gaatctacctccacacacataaaattcaaattgacttccaagataacaaccctaaaactgtatgtctcaagaagacatatacaaatacaaaatcatgtat |
41246915 |
T |
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| Q |
120 |
gtctgacttaataacacacctaaaatcatcgtactttgat--gaagtatttgatcatccactaactaatatagcttcatggat |
200 |
Q |
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| T |
41246916 |
gtctgacttaataacatacctaaagttattgtaatttgatatgaagtatttgatcatccatcagctaatatagcttcatggat |
41246998 |
T |
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