View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13787_low_2 (Length: 842)
Name: NF13787_low_2
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13787_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 426 - 823
Target Start/End: Original strand, 17558910 - 17559310
Alignment:
| Q |
426 |
gtacctgaacttcaacaagaccattactttgagcaataacaacttcaatgattccatcaggtttaggacgccaataaccactctcagcatgcataggctc |
525 |
Q |
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| T |
17558910 |
gtacctgaacttcaacaagaccattactttgagcaataacaacttcaatgatcccatcaggtttaggacgccaataaccactctcagcatgcataggctc |
17559009 |
T |
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| Q |
526 |
accagaactaagtttccatgtcttctgagtgtaccctatcacaggcta----cacccacccacccatttcacacaatcaatacacaacaacaaagttaac |
621 |
Q |
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| T |
17559010 |
accagaactaagtttccatgtcttctgagtgtaccctatcacaggctacacccacccacccacccatttcacacaatcaatacacaacaacaaagttaac |
17559109 |
T |
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| Q |
622 |
aagaatcaaaaccaacccattaataaaaatgaatactttgagagacccaaatggaaattatgaagaaagagagaggaaaagcagcaaccttgttgggtgg |
721 |
Q |
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| T |
17559110 |
aagaatcaaaaccaacccattaataaaaatgaatactttgagagacccaaatgaaaattatgaagaaagagaga-gaaaagcagcaaccttgttgggtgg |
17559208 |
T |
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| Q |
722 |
atggtagaagtgaagttcttcaccataggagaaggagttgatggtggggtagccaccttctccttggcctctccatgttccgagaaggtatgagagtggt |
821 |
Q |
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| T |
17559209 |
atggtagaagtgaagttcttcaccataggagaaggagttgatggtggggtagccaccttctccttggcctctccatgttccgagaaggtatgagagtggt |
17559308 |
T |
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| Q |
822 |
gc |
823 |
Q |
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| T |
17559309 |
gc |
17559310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 390
Target Start/End: Original strand, 17558482 - 17558877
Alignment:
| Q |
15 |
aatataaaaccatggccaccccataattttgtttgatgaaaaagccaacccagattttggaataacatatcctaatatggaaacatgaacaagaaataag |
114 |
Q |
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| T |
17558482 |
aatataaaaccatggccaccccataattttgtttgatgaaaaagccaacccagattttggaataacatatcctaatatggaaacatgaacaagaaataag |
17558581 |
T |
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| Q |
115 |
taatccattgcataacttatacagcaaagatattatt------gatggaagagatgcaattgcaattgaaatgttcttttgcaaattaaggaagagataa |
208 |
Q |
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| T |
17558582 |
taatccattgcataacttatacagcaaagatattattaatattgatggaagagatgcaattgcaattgaaatgttcttttgcaaatgaaggaagagataa |
17558681 |
T |
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| Q |
209 |
actcttct---gggattggggc-----------aaatagaacatgtgtttgttacatggcttgacaagtaaggaattgggcttagtacaaaaagcaacta |
294 |
Q |
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| T |
17558682 |
actcttcttctgggattggtgcttatttgtagtaaatagaacatgtgtttgttacatggcttgacaagtaaggaattgggcttagtacaaaaagcaacta |
17558781 |
T |
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| Q |
295 |
aatcaacttgaaccttcaaatccaccatttctaggataaggaacatagatacacacacaaatttgaagccaattagtcaaacagtgtttatccttg |
390 |
Q |
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| T |
17558782 |
aatcaacttgaaccttcaaatccaccatttctaggataaggaacatagatacacacacaaatttgaagccaattagtcaaacagtgtttatccttg |
17558877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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