View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13787_low_20 (Length: 286)
Name: NF13787_low_20
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13787_low_20 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 14003072 - 14002787
Alignment:
| Q |
1 |
ctcaaataggtgccctgctcttttgcaactggtactgctaagatgtgattatatcacagacaagggagtcatgcacgtggtaaacaactgcacgcaactc |
100 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003072 |
ctcaaataggtgccctgccctttggcaactggtactgctaagatgtgattatatcacagacaagggagtcatgcacgtggtaaacaactgcacgcaactc |
14002973 |
T |
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| Q |
101 |
agagagataagtttgaatggctgtcctaatgtgcaagctaaagttgttgcctccatggtagtttcaaggccatcattgagaaagatccatgttccaccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14002972 |
agagagataagtttgaatggctgtcctaatgtgcaagctaaagttgttgcctccatggtagtttcaaggccatcattgagaaagatccatgttccaccca |
14002873 |
T |
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| Q |
201 |
actttcctttgagcgacagaaataggaaactcttctcgcgccacggatgtctacttgtgaggtgaagtggattgaaactatgcaaa |
286 |
Q |
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| T |
14002872 |
actttcctttgagcgacagaaataggaaactcttctcgcgccacggatgtctaattgtgaggtgaagtggattcaaactatgcaaa |
14002787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 5767735 - 5768020
Alignment:
| Q |
1 |
ctcaaataggtgccctgctcttttgcaactggtactgctaagatgtgattatatcacagacaagggagtcatgcacgtggtaaacaactgcacgcaactc |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5767735 |
ctcaaataggtgccctgcccttttgcaactggtactgctaagatgtgattatatcacagacaagggagtcatgcacgtggtaaacaactgcacacaactc |
5767834 |
T |
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| Q |
101 |
agagagataagtttgaatggctgtcctaatgtgcaagctaaagttgttgcctccatggtagtttcaaggccatcattgagaaagatccatgttccaccca |
200 |
Q |
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| T |
5767835 |
agagagataaatttggatggctgtcctaatgtgcaagctaaagttgttgcctccatggtagtttcaaggccatcattgagaaagatccatgttccaccca |
5767934 |
T |
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| Q |
201 |
actttcctttgagcgacagaaataggaaactcttctcgcgccacggatgtctacttgtgaggtgaagtggattgaaactatgcaaa |
286 |
Q |
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| T |
5767935 |
actttcctttgagcgacagaaataggaaactcttctcgcgccacggatgtctacttgtgatgtgaagtggattgaaactatgcaaa |
5768020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 55505238 - 55505370
Alignment:
| Q |
54 |
tcacagacaagggagtcatgcacgtggtaaacaactgcacgcaactcagagagataagtttgaatggctgtcctaatgtgcaagctaaagttgttgcctc |
153 |
Q |
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||||||| |||||||| | |||||| || | |||||||| ||||| |||||||| | ||||| || ||| ||| ||||| ||| ||||||| ||| |
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| T |
55505238 |
tcacagagaagggagtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatactagtgttgttgactc |
55505337 |
T |
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| Q |
154 |
catggtagtttcaaggccatcattgagaaagat |
186 |
Q |
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| T |
55505338 |
aatggtattttcaaggccatcattgagaaagat |
55505370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 640798 - 640749
Alignment:
| Q |
137 |
gctaaagttgttgcctccatggtagtttcaaggccatcattgagaaagat |
186 |
Q |
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| T |
640798 |
gctaatgtcgttgactcaatggtattttcaaggccatcattgagaaagat |
640749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 514950 - 514993
Alignment:
| Q |
143 |
gttgttgcctccatggtagtttcaaggccatcattgagaaagat |
186 |
Q |
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| T |
514950 |
gttgttgccccaatggtattttcaaggccatcattgagaaagat |
514993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 51113914 - 51114041
Alignment:
| Q |
54 |
tcacagacaagggagtcatgcacgtggtaaacaactgcacgcaactcagagagataagtttgaatggctgtcctaatgtgcaagctaaagttgttgcctc |
153 |
Q |
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||||||| |||||||| | ||| |||||| | || ||||| |||| |||||||| | ||| || || ||| ||| ||||| ||||| |||||||||| |
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| T |
51113914 |
tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc |
51114013 |
T |
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| Q |
154 |
catggtagtttcaaggccatcattgaga |
181 |
Q |
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||| || |||||||||||||||||||| |
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| T |
51114014 |
aatgatattttcaaggccatcattgaga |
51114041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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