View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13787_low_21 (Length: 280)
Name: NF13787_low_21
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13787_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 10866226 - 10866476
Alignment:
| Q |
18 |
aaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10866226 |
aaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcaca |
10866325 |
T |
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| Q |
118 |
atctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10866326 |
atctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaag |
10866425 |
T |
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| Q |
218 |
aagacattgctgaaaaaaccactcaaggagtcttgccgaagaagctaccta |
268 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10866426 |
aagacattgctgcaaaaaccactcaaggagtcttgccgaagaagctaccta |
10866476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 10874079 - 10873829
Alignment:
| Q |
18 |
aaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10874079 |
aaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcaca |
10873980 |
T |
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| Q |
118 |
atctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaag |
217 |
Q |
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| T |
10873979 |
atctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaag |
10873880 |
T |
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| Q |
218 |
aagacattgctgaaaaaaccactcaaggagtcttgccgaagaagctaccta |
268 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10873879 |
aagacattgctgcaaaaaccactcaaggagtcttgccgaagaagctaccta |
10873829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 10879150 - 10878900
Alignment:
| Q |
18 |
aaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10879150 |
aaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcaca |
10879051 |
T |
|
| Q |
118 |
atctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10879050 |
atctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaag |
10878951 |
T |
|
| Q |
218 |
aagacattgctgaaaaaaccactcaaggagtcttgccgaagaagctaccta |
268 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10878950 |
aagacattgctgcaaaaaccactcaaggagtcttgccgaagaagctaccta |
10878900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 10884221 - 10883971
Alignment:
| Q |
18 |
aaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10884221 |
aaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcaca |
10884122 |
T |
|
| Q |
118 |
atctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10884121 |
atctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaag |
10884022 |
T |
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| Q |
218 |
aagacattgctgaaaaaaccactcaaggagtcttgccgaagaagctaccta |
268 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10884021 |
aagacattgctgcaaaaaccactcaaggagtcttgccgaagaagctaccta |
10883971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 10888142 - 10887948
Alignment:
| Q |
24 |
tgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctct |
123 |
Q |
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|
|||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
10888142 |
tgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacatcctcacagtctct |
10888043 |
T |
|
| Q |
124 |
gagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaaga |
218 |
Q |
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|||||| | ||| | |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||| || ||||| |
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| T |
10888042 |
gagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgctttcttcggcactgccttcatcattcattacgatgatgatgaaga |
10887948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 39675807 - 39675999
Alignment:
| Q |
26 |
ttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctga |
125 |
Q |
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||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
39675807 |
ttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccga |
39675906 |
T |
|
| Q |
126 |
gattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaaga |
218 |
Q |
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|||||| ||||| ||||||||||| |||| | || ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
39675907 |
gattcttgctctagtttccctcattgcttgccttatctaccttacggctttctttggcgttgccttcatccttcattacgatgaagaagaaga |
39675999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 10045800 - 10045975
Alignment:
| Q |
26 |
ttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctga |
125 |
Q |
| |
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||||||| ||||| |||||||||||||| || |||||||| ||||||||||||| |||||||||||||| |||||||| || || |||||||||||||| |
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| T |
10045800 |
ttttcttcggtcttttcttctccgtcgcgtattttcttcttcacaggtggcgtgagaagatccgaacctccacacctcttcatgttctcacaatctctga |
10045899 |
T |
|
| Q |
126 |
gattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcat |
201 |
Q |
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|||| || | ||||||||||||| ||||||||| | |||||||| ||||||||||||||| |||||| |||||| |
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| T |
10045900 |
gattgccggtgttgtttccctcatagcttcctttatttaccttatggctttcttcggcattggcttcattcttcat |
10045975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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