View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13787_low_24 (Length: 260)

Name: NF13787_low_24
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13787_low_24
NF13787_low_24
[»] chr2 (11 HSPs)
chr2 (99-246)||(11192281-11192428)
chr2 (12-72)||(11192194-11192254)
chr2 (27-72)||(11185383-11185428)
chr2 (101-165)||(11171001-11171065)
chr2 (99-146)||(11095314-11095361)
chr2 (99-146)||(11103455-11103502)
chr2 (99-146)||(11109440-11109487)
chr2 (99-176)||(11145085-11145162)
chr2 (99-138)||(11117912-11117951)
chr2 (99-138)||(11176994-11177033)
chr2 (101-135)||(11198311-11198345)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 8e-76; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 11192281 - 11192428
Alignment:
Q  99 catacttgaacaaaacaatcatgaaaatgaagcctaatgaaactggcaaggatacgaggatctgtctgagatacgtttgctaagatactttggacaatgg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11192281 catacttgaacaaaacaatcatgaaaatgaagcctaatgaaactggcaaggatacgaggatctgtctgagaaacgtttgctaagatactttggacaatgg 11192380  T
Q  199 aagtgacatttggacatgtgtccttatagaagttaggatcaagttgtg 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11192381 aagtgacatttggacatgtgtccttatagaagttaggatcaagttgtg 11192428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 11192194 - 11192254
Alignment:
Q  12 atcacatgttcttcatgattctatcaaactcgttgtggcttcaacaatatcacatcgcaat 72  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  11192194 atcacatgttctttgtgattctatcaaactcgttgtggcttcaacaatatcacatcgcaat 11192254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 11185383 - 11185428
Alignment:
Q  27 tgattctatcaaactcgttgtggcttcaacaatatcacatcgcaat 72  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  11185383 tgattctatcaaactcgttgtggcttcaacaaaatcacatcgcaat 11185428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 11171065 - 11171001
Alignment:
Q  101 tacttgaacaaaacaatcatgaaaatgaagcctaatgaaactggcaaggatacgaggatctgtct 165  Q
    |||||||||||| |||||||| || |||||||| || ||||| ||||| ||||||||||||||||    
T  11171065 tacttgaacaaagcaatcatggaagtgaagccttatcaaactagcaagtatacgaggatctgtct 11171001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 11095361 - 11095314
Alignment:
Q  99 catacttgaacaaaacaatcatgaaaatgaagcctaatgaaactggca 146  Q
    |||||||||||||| |||||||| |||||||||||||||| |||||||    
T  11095361 catacttgaacaaagcaatcatggaaatgaagcctaatgagactggca 11095314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 11103502 - 11103455
Alignment:
Q  99 catacttgaacaaaacaatcatgaaaatgaagcctaatgaaactggca 146  Q
    |||||||||||||| |||||||||||||||||||| |||| |||||||    
T  11103502 catacttgaacaaagcaatcatgaaaatgaagcctgatgagactggca 11103455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 11109487 - 11109440
Alignment:
Q  99 catacttgaacaaaacaatcatgaaaatgaagcctaatgaaactggca 146  Q
    ||||||||||| ||||||||||||||||||||||| |||| |||||||    
T  11109487 catacttgaacgaaacaatcatgaaaatgaagcctgatgatactggca 11109440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 11145162 - 11145085
Alignment:
Q  99 catacttgaacaaaacaatcatgaaaatgaagcctaatgaaactggcaaggatacgaggatctgtctgagatacgttt 176  Q
    ||||||||||||||||| ||||| || ||||||||||  | ||| ||||| ||||||| |||||||| ||| ||||||    
T  11145162 catacttgaacaaaacagtcatggaagtgaagcctaacaagacttgcaagcatacgagtatctgtcttagaaacgttt 11145085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 11117951 - 11117912
Alignment:
Q  99 catacttgaacaaaacaatcatgaaaatgaagcctaatga 138  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  11117951 catacttgaacgaaacaatcatgaaagtgaagcctaatga 11117912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 11177033 - 11176994
Alignment:
Q  99 catacttgaacaaaacaatcatgaaaatgaagcctaatga 138  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  11177033 catacttgaacaaaacagtcatgaaaatgtagcctaatga 11176994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 11198345 - 11198311
Alignment:
Q  101 tacttgaacaaaacaatcatgaaaatgaagcctaa 135  Q
    |||||||||||||||||||||||| ||||||||||    
T  11198345 tacttgaacaaaacaatcatgaaagtgaagcctaa 11198311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University