View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13787_low_27 (Length: 222)

Name: NF13787_low_27
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13787_low_27
NF13787_low_27
[»] chr8 (10 HSPs)
chr8 (25-202)||(45216770-45216947)
chr8 (25-202)||(28876115-28876292)
chr8 (37-202)||(4246320-4246485)
chr8 (37-202)||(34900931-34901096)
chr8 (25-202)||(43771243-43771419)
chr8 (25-202)||(5539813-5539990)
chr8 (25-192)||(12580085-12580252)
chr8 (25-193)||(36483825-36483993)
chr8 (25-193)||(37668970-37669138)
chr8 (25-191)||(2872535-2872701)
[»] chr3 (9 HSPs)
chr3 (25-202)||(52505371-52505548)
chr3 (25-202)||(42464481-42464658)
chr3 (25-202)||(10224699-10224876)
chr3 (41-202)||(28705130-28705291)
chr3 (25-202)||(48123218-48123394)
chr3 (37-182)||(1679241-1679386)
chr3 (25-193)||(45532610-45532778)
chr3 (25-202)||(25936626-25936803)
chr3 (64-171)||(50523019-50523127)
[»] chr6 (3 HSPs)
chr6 (25-202)||(7188328-7188505)
chr6 (37-202)||(1036376-1036541)
chr6 (25-193)||(8357283-8357450)
[»] chr5 (7 HSPs)
chr5 (25-202)||(12852503-12852680)
chr5 (25-202)||(30918745-30918922)
chr5 (37-202)||(9792689-9792854)
chr5 (25-202)||(26794541-26794718)
chr5 (25-202)||(33830154-33830331)
chr5 (25-193)||(32707449-32707617)
chr5 (25-193)||(1639337-1639505)
[»] scaffold0005 (1 HSPs)
scaffold0005 (25-198)||(44154-44327)
[»] chr4 (10 HSPs)
chr4 (25-198)||(14795404-14795577)
chr4 (25-202)||(31226731-31226908)
chr4 (37-202)||(8063657-8063822)
chr4 (25-202)||(3403122-3403299)
chr4 (25-202)||(53322733-53322910)
chr4 (25-193)||(52122487-52122655)
chr4 (25-202)||(52572583-52572760)
chr4 (25-193)||(41146008-41146175)
chr4 (114-202)||(5325340-5325428)
chr4 (64-171)||(54433545-54433652)
[»] scaffold0060 (1 HSPs)
scaffold0060 (25-202)||(29985-30162)
[»] chr7 (7 HSPs)
chr7 (37-202)||(40096050-40096215)
chr7 (25-202)||(39521163-39521340)
chr7 (25-193)||(27397665-27397833)
chr7 (25-193)||(11830090-11830258)
chr7 (37-202)||(36660859-36661024)
chr7 (72-193)||(38265099-38265220)
chr7 (64-171)||(25557619-25557726)
[»] chr1 (10 HSPs)
chr1 (37-202)||(6916424-6916589)
chr1 (37-202)||(38330830-38330995)
chr1 (37-202)||(52895263-52895428)
chr1 (25-202)||(3427253-3427429)
chr1 (37-202)||(8132563-8132728)
chr1 (25-202)||(28658856-28659033)
chr1 (25-193)||(1043564-1043732)
chr1 (25-193)||(30324111-30324279)
chr1 (25-193)||(5984579-5984745)
chr1 (25-193)||(25257008-25257176)
[»] chr2 (7 HSPs)
chr2 (25-202)||(6124580-6124756)
chr2 (25-202)||(22484660-22484837)
chr2 (25-202)||(40308386-40308563)
chr2 (25-193)||(38601938-38602106)
chr2 (25-193)||(4170070-4170238)
chr2 (25-193)||(6497220-6497388)
chr2 (70-193)||(33325155-33325278)
[»] scaffold0640 (1 HSPs)
scaffold0640 (25-193)||(7705-7873)
[»] scaffold0037 (1 HSPs)
scaffold0037 (25-193)||(27334-27502)
[»] scaffold0177 (1 HSPs)
scaffold0177 (29-193)||(25172-25336)
[»] scaffold0112 (1 HSPs)
scaffold0112 (25-193)||(41632-41800)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 45216770 - 45216947
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  45216770 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttgaatccattttgtttctttttcaagaatgg 45216869  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45216870 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 45216947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 28876115 - 28876292
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  28876115 atatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 28876214  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28876215 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 28876292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 4246485 - 4246320
Alignment:
Q  37 tttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  4246485 tttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaa 4246386  T
Q  137 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4246385 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaagcttt 4246320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 34900931 - 34901096
Alignment:
Q  37 tttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  34900931 tttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaa 34901030  T
Q  137 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34901031 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaagcttt 34901096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 43771243 - 43771419
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  43771243 atatccatcttctttccttgacaatagtcgaagattagtatgcacataa-ccaaattttctaccctttttggatccattttgtttcttttcaaagaatgg 43771341  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43771342 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttacacaagaagctttaaagcaagcttt 43771419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 5539990 - 5539813
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| |    
T  5539990 atatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatag 5539891  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  5539890 ataaaagagaaagtactcaaatttatctcacaacagaaggaagaacaaggttgcacaagaagctttaaagtaagcttt 5539813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 12580085 - 12580252
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  12580085 atatccatcttctttccttgacaagagtcgaagattagtatgcacaaaaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 12580184  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaa 192  Q
    |||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12580185 ataaaagagaaagtacaccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaa 12580252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 36483993 - 36483825
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||  ||||||||    
T  36483993 atatccatcttctttccttgacaagagttgaagattagtatgcacataaaccaaatcttctaccctttttggatccattttgtttattttcaaagaatgg 36483894  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36483893 ataaaagaaaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 36483825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 37669138 - 37668970
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| ||| |||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||  ||||||||    
T  37669138 atatccatcttctttccttgacaagagttgaagattagtatgcacataaaccaaatcttctaccttttttggatccattttgtttcttttcaaagaatgg 37669039  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37669038 ataaaagaaaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 37668970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 2872535 - 2872701
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| | |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||  ||||||||    
T  2872535 atatccatcttctttccttgacaagattcgaagattagtatgcacataaaccaaatcttctaccctttttcgatccattttgtttcttttcaaagaatgg 2872634  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagcttta 191  Q
    |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||    
T  2872635 ataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagcttta 2872701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 52505371 - 52505548
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  52505371 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttctttttcaagtatgg 52505470  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52505471 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaatgttgcacaagaagctttaaagcaagcttt 52505548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 42464481 - 42464658
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  42464481 atatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 42464580  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42464581 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaaacttt 42464658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 10224699 - 10224876
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||    
T  10224699 atatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggatccattttatttcttttcaaagaatgg 10224798  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10224799 ataaaagagaaagtgctcaaatttctcttacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 10224876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 28705291 - 28705130
Alignment:
Q  41 cttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaagtac 140  Q
    |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  28705291 cttgacaaaagtcgaagattaatatgcacataaacaaaatcttctaccctttttggatccattttgtttcttttaaaagaatggataaaagagaaagtac 28705192  T
Q  141 tcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28705191 tcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaagcttt 28705130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 48123394 - 48123218
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctacccttttt-ggatccattttgtttctttttcaagaatg 123  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||  |||  |||||||    
T  48123394 atatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctacccttttttggatccattttgttt--tttcaaagaatg 48123297  T
Q  124 gataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48123296 gataaaagagaaagtactcaaatttctctcacaacaggatgaagaacaaggttgcacaagaagctttaaagcaagcttt 48123218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 1679241 - 1679386
Alignment:
Q  37 tttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  1679241 tttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaa 1679340  T
Q  137 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaa 182  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  1679341 gtactcaaatttctctcacaacaggaggaagaaaaaggttgcacaa 1679386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 45532610 - 45532778
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| |||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  45532610 atatccatcttctttccttgacaagagtcaaagattagtatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 45532709  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45532710 ataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 45532778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 25936626 - 25936803
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    |||| |||||| |||||||||||| |||||||||||| ||| |||||||||||||| |||||  ||||||||||||||||||||||||||  ||||||||    
T  25936626 atattcatcttctttccttgacaagagtcgaagattagtatccacataaaccaaatcttctattctttttggatccattttgtttcttttcaaagaatgg 25936725  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  25936726 ataaaagagaaagtaccctaatttctctcacaaccggaggaagaacaaggttgcacaagaagctgtaaaacaagcttt 25936803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 50523019 - 50523127
Alignment:
Q  64 atgcacataaaccaaatattctaccc-tttttggatccattttgtttctttttcaagaatggataaaagagaaagtactcaaatttctctcacaacagga 162  Q
    |||| |||||||||||| ||| |||| |||||||||||||||| ||||||||  || |||| ||||||||| |||||||| ||||| | ||| |||| ||    
T  50523019 atgcgcataaaccaaatcttcaacccctttttggatccattttatttcttttgaaataatgaataaaagagtaagtactccaatttttttcaaaacatga 50523118  T
Q  163 ggaagaaca 171  Q
     ||||||||    
T  50523119 tgaagaaca 50523127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 7188328 - 7188505
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  7188328 atatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttctttttaaagaatgg 7188427  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7188428 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaatgcaagcttt 7188505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 1036376 - 1036541
Alignment:
Q  37 tttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  1036376 tttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaa 1036475  T
Q  137 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1036476 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaagcttt 1036541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 8357450 - 8357283
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||| ||||||||  ||||||||    
T  8357450 atatccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctaccctttt-ggatctattttatttcttttcaaagaatgg 8357352  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8357351 ataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 8357283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 12852680 - 12852503
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  12852680 atatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 12852581  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12852580 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 12852503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 30918922 - 30918745
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  30918922 atatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 30918823  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30918822 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaaacttt 30918745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 9792854 - 9792689
Alignment:
Q  37 tttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  9792854 tttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaa 9792755  T
Q  137 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  9792754 gtactcaaatttctctcacaacaggaggaagaacaaggttgtacaggaagctttaaagcaagcttt 9792689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 26794541 - 26794718
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||    
T  26794541 atatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggatccattttatttcttttcaaagaatgg 26794640  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26794641 ataaaagagaaagtgctcaaatttctcttacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 26794718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 33830331 - 33830154
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||  || ||||||||||||||||||||||||||||||  ||||||||    
T  33830331 atatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaagcttttaccctttttggatccattttgtttcttttcaaagaatgg 33830232  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  33830231 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaagaaggttgcacaagaagctttaaagctagcttt 33830154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 32707449 - 32707617
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  32707449 atatccatcttctttccttgacaagagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 32707548  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32707549 ataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 32707617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 1639337 - 1639505
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    |||||||| || ||||||| |||| |||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  1639337 atatccatattctttccttcacaagagtcgaagattagtacgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 1639436  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1639437 ataaaatagaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 1639505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 44154 - 44327
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||    
T  44154 atatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctaccctttttggatccattttgtttctttttaaagactgg 44253  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaag 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44254 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaag 44327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 14795577 - 14795404
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||    
T  14795577 atatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctaccctttttggatccattttgtttctttttaaagactgg 14795478  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaag 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14795477 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaag 14795404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 31226908 - 31226731
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| |    
T  31226908 atatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaattg 31226809  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31226808 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 31226731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 8063657 - 8063822
Alignment:
Q  37 tttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  8063657 tttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaa 8063756  T
Q  137 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8063757 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaagcttt 8063822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 3403122 - 3403299
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  3403122 atatccaccttctttccttgactatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 3403221  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  3403222 ataaaagagaaagtactcaaatttctctcacaacaggaggaaaaacaaggttgcacaggaagctttaaagcaagcttt 3403299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 53322910 - 53322733
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||| ||||| |||||||||||||||||||||||||||  ||||||||    
T  53322910 atatccatcttctttccttgacaaaagtcgaagattaggatgcacataaaccaaatcttctatcctttttggatccattttgtttcttttcaaagaatgg 53322811  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  53322810 ataaaagagaaagtactccaatttctctcacagcaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 53322733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 52122487 - 52122655
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  52122487 atatccatcttctttccttgacaagagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 52122586  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52122587 ataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 52122655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 52572760 - 52572583
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||  ||||||||    
T  52572760 atatccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctatcctttttggatccattttgtttcttttcaaagaatgg 52572661  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52572660 ataaaagagaaagttctctaatttctcttacatcaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 52572583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 41146175 - 41146008
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||| | |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||  ||||||||    
T  41146175 atatccatcgtctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctaccctttt-ggatccattttgtttcttttcaaagaatgg 41146077  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||||||||| ||||||||||||||||  ||||||||||| |||||||||||| |||||||    
T  41146076 ataaaagagaaagtactccaatttctctcacaacataaggaagaacaatgttgcacaagaaactttaaa 41146008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 5325340 - 5325428
Alignment:
Q  114 ttcaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  5325340 ttcaagaatggataaaagagaaagtactcaaatttctctcacaacatgaggaagaacaatgttgcacaagaagctttaaagcaagcttt 5325428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 54433652 - 54433545
Alignment:
Q  64 atgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaagtactcaaatttctctcacaacaggag 163  Q
    |||| ||||||||| || ||| |||||||||||||||||||| ||||||||  ||||||  ||||||||| |||||||| ||||| ||||| |||| ||     
T  54433652 atgcgcataaaccacatcttcaaccctttttggatccattttatttcttttcaaagaataaataaaagagtaagtactccaatttttctcagaacatgat 54433553  T
Q  164 gaagaaca 171  Q
    ||||||||    
T  54433552 gaagaaca 54433545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 29985 - 30162
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  29985 atatccatcttctttccttaacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 30084  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30085 ataaaagagaaagtactcaaatttctctcacaacaggagaaagaacaaggttgcacaagaagctttaaagcaagcttt 30162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 40096215 - 40096050
Alignment:
Q  37 tttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  40096215 tttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaa 40096116  T
Q  137 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40096115 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaagcttt 40096050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 39521340 - 39521163
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||  |||||| |    
T  39521340 atatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggatctattttgtttcttttcaaagaatag 39521241  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39521240 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaatctttaaagcaagcttt 39521163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 27397665 - 27397833
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  27397665 atatccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttctaagaatgg 27397764  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27397765 ataaaagagaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 27397833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 11830258 - 11830090
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| |||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  11830258 atatccatcttctttccttgacaagagtcgaagattagtatgcatataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 11830159  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    ||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11830158 ataaatgagaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 11830090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 36661024 - 36660859
Alignment:
Q  37 tttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaa 136  Q
    |||||||||||| |||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||| ||||||||  ||||||||||||||||||||    
T  36661024 tttccttgacaagagtcgaagattagtatgcacacaaaccaaatcttctaccatttttggatccattttctttcttttcaaagaatggataaaagagaaa 36660925  T
Q  137 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36660924 gtactccaatttctctcacaataggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 36660859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 38265220 - 38265099
Alignment:
Q  72 aaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaaca 171  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| | |||||||||||||||| |||||||||||    
T  38265220 aaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatgaggaagaaca 38265121  T
Q  172 aggttgcacaagaagctttaaa 193  Q
    ||||||||||||||||||||||    
T  38265120 aggttgcacaagaagctttaaa 38265099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 25557726 - 25557619
Alignment:
Q  64 atgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaagtactcaaatttctctcacaacaggag 163  Q
    |||| |||||||||||| |||  ||||||||||||||||||| ||||||||  ||||||| ||||||||| |||||||| ||||||||||| |||| ||     
T  25557726 atgcgcataaaccaaatcttcagccctttttggatccattttatttcttttcaaagaatgaataaaagagtaagtactccaatttctctcagaacatgat 25557627  T
Q  164 gaagaaca 171  Q
    ||||||||    
T  25557626 gaagaaca 25557619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 6916424 - 6916589
Alignment:
Q  37 tttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  6916424 tttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaa 6916523  T
Q  137 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6916524 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaagcttt 6916589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 38330995 - 38330830
Alignment:
Q  37 tttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  38330995 tttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaa 38330896  T
Q  137 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38330895 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaagcttt 38330830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 52895263 - 52895428
Alignment:
Q  37 tttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  52895263 tttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaa 52895362  T
Q  137 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52895363 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaagcttt 52895428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 3427429 - 3427253
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  3427429 atatccatcttctttccttgacaatagtcgaagattagtatgcacataa-ccaaattttctaccctttttggatccattttgtttcttttcaaagaatgg 3427331  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3427330 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttacacaagaagctttaaagcaagcttt 3427253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 8132728 - 8132563
Alignment:
Q  37 tttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaa 136  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  8132728 tttccttgacaacagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttatttcttttcaaagaatggataaaagagaaa 8132629  T
Q  137 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8132628 gtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaagcttt 8132563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 28658856 - 28659033
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||| ||||||| |||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||  ||||||||    
T  28658856 atatccatcttctttcattgacaagagtcgaagattagtatgcacataaaccaaatcttctatcctttttggatccattttgtttcttttcaaagaatgg 28658955  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28658956 ataaaagagaaagtactctaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 28659033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 1043732 - 1043564
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||  ||||||||    
T  1043732 atatccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctaccctttttggatctattttgtttcttttcaaagaatgg 1043633  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1043632 ataaaagagaaagtatccaaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 1043564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 30324279 - 30324111
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    |||| |||||| |||||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  30324279 atattcatcttctttccttgacaagagtcggagattagtatccacataaaccaaatattctaccctttttggatccattttgtttcttttcaaagaatgg 30324180  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30324179 ataaaagagaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 30324111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 5984745 - 5984579
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||| ||||||||    
T  5984745 atatccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttataccctttttagatccattttgtttctttttaaagaatgg 5984646  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    ||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  5984645 ataaaagagaaagtactcaaatttctct--caacatgaggaagaacaaggttgcacaagaagctttaaa 5984579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 25257176 - 25257008
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    |||||||| || |||||||||||| | |||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||    
T  25257176 atatccattttctttccttgacaagaatcgaagattagtatgcacataaaccaaatcttctaccctttttggatccattttatttcttttcaaagaatgg 25257077  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||||||||  |||||||||||||||| |||||| |||||||||||||||||| |||||||    
T  25257076 ataaaagagaaagtactgcaatttctctcacaacatgaggaataacaaggttgcacaagaaactttaaa 25257008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 4e-77; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 6124756 - 6124580
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  6124756 atatccatcttctttccttgacaatagtcgaagattagtatgcacataa-ccaaattttctaccctttttggatccattttgtttcttttcaaagaatgg 6124658  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6124657 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttacacaagaagctttaaagcaagcttt 6124580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 22484837 - 22484660
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||  ||||||||    
T  22484837 atatcgatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccccttttggatccattttgtttcttttaaaagaatgg 22484738  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22484737 ataaaagagaaagtactcaaatttcactcacaacaggaggaagaacaaggttgcacaagaaactttaaagcaagcttt 22484660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 40308386 - 40308563
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||  ||||||||    
T  40308386 atatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttataccctttttggatccattttgtttcttttcaaagaatgg 40308485  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 202  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40308486 atagaagagaaagtactcaaatttctctcacaagaggaggaagaacaaggttgcacaagaagctttaaagcaagcttt 40308563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 38601938 - 38602106
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  38601938 atatccatcttctttccttgacaagagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 38602037  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38602038 ataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 38602106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 4170070 - 4170238
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  4170070 atatccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 4170169  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4170170 ataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 4170238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 6497220 - 6497388
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||  ||||||||    
T  6497220 atatccatcttctttccttgacaagagttgaagattagtatgcacataaaccaaatcttctaccctttttggatccattttgtttattttcaaagaatgg 6497319  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6497320 ataaaagaaaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 6497388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 33325278 - 33325155
Alignment:
Q  70 ataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaa 169  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| | |||||||||||||||| |||||||||    
T  33325278 ataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatgaggaagaa 33325179  T
Q  170 caaggttgcacaagaagctttaaa 193  Q
    ||||||||||||||||||||||||    
T  33325178 caaggttgcacaagaagctttaaa 33325155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 7705 - 7873
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  7705 atatccatcttctttccttgacaagagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 7804  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7805 ataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 7873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 27334 - 27502
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  27334 atatccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 27433  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  27434 ataaaagagaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaggaagctttaaa 27502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 25172 - 25336
Alignment:
Q  29 ccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatggataa 128  Q
    ||||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||    
T  25172 ccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataa 25271  T
Q  129 aagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||| | ||||||||||| |||| || ||||||||||||| ||||||||||||||||    
T  25272 aagagaaagtaccccaatttctctcaaaacatgatgaagaacaaggtttcacaagaagctttaaa 25336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 41632 - 41800
Alignment:
Q  25 atatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatattctaccctttttggatccattttgtttctttttcaagaatgg 124  Q
    ||||||||||| |||||||||||| |||  ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  41632 atatccatcttctttccttgacaagagtaaaagattagtatgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatgg 41731  T
Q  125 ataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaa 193  Q
    |||||||||||||||||| ||||||||||| ||||  |||||||||||||||| |||||||||||||||    
T  41732 ataaaagagaaagtactccaatttctctcataacataaggaagaacaaggttgtacaagaagctttaaa 41800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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