View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13787_low_28 (Length: 207)
Name: NF13787_low_28
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13787_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 7187198 - 7187022
Alignment:
| Q |
15 |
aactttattttagattttcaatagtatgaa-cgaattagtggggctgaatttattcccacataactagaccacaagtacttgttgttttcgaaagatata |
113 |
Q |
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| T |
7187198 |
aactttattttagattttcaatagtatgaaacgaatgagtggggctgaatttattcccacataactagacaacaagtacttgttgttttcgaaagatata |
7187099 |
T |
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| Q |
114 |
aacatgatatctccattctaaatcgaatattcctgcactttaaactaataggtttaattatacttgaaacttatagc |
190 |
Q |
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| T |
7187098 |
agcatgatatctccattctaaatcgaatattcctgcactttaaactaataggtttaattatacttgaaacttatagc |
7187022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 7175653 - 7175498
Alignment:
| Q |
20 |
tattttagattttcaatagtatgaacgaattagtggggctgaatttattcccacataactagaccacaagtacttgttgttttcgaaagatataaacatg |
119 |
Q |
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| T |
7175653 |
tattttagattttctgtagtttgaacgaatgagtga--caaaatgtattcccacattactagactacaagtacttgttgctttcggaagatataagcatg |
7175556 |
T |
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| Q |
120 |
atatctccattctaaa-tcgaatattcctgcactttaaactaataggtttaattatactt |
178 |
Q |
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| T |
7175555 |
ctattt--attctaaattcgatttttactgcagtttaaaaatataggtttaattatactt |
7175498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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