View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13787_low_30 (Length: 203)
Name: NF13787_low_30
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13787_low_30 |
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| [»] scaffold0627 (1 HSPs) |
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Alignment Details
Target: scaffold0627 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 5860 - 5691
Alignment:
| Q |
15 |
aagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatgttgttatttt |
114 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5860 |
aagaaaagagggttcaattacccctattagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatgttgttatttt |
5761 |
T |
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| Q |
115 |
gatattcttccatcccacctcaccacccacatttttcttcaacttcctatcaagtctcttctcatatgta |
184 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
5760 |
gatattcttccatcccacctcaccactcacatttttcttcaacttcccatcaagtctcttctcatttgta |
5691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 16717576 - 16717404
Alignment:
| Q |
15 |
aagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatgttgt---tat |
111 |
Q |
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||||||| |||||||||| | ||| || |||||||||| ||||||||||||| |||| ||| ||||||||||||||||||| |||||||| | ||| |
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| T |
16717576 |
aagaaaaaagggttcaatcacccccgtaagggctagccaaagatgcaataaaagaaaatggagagttgaggaggcagaaagtgatgaatgtcgccactat |
16717477 |
T |
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| Q |
112 |
tttgatattcttccatcccacctcaccacccacatttttcttcaacttcctatcaagtctcttctcatatgta |
184 |
Q |
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| T |
16717476 |
tttgatattcttccatcccacctcaccgcccacattttgcttcaacttcccatcaagtctcttctcatttgta |
16717404 |
T |
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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 8546992 - 8547167
Alignment:
| Q |
15 |
aagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtc---atgaatgttg---t |
108 |
Q |
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||||||| ||| ||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||| |||||||| | || ||||| ||| | |
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| T |
8546992 |
aagaaaaaaggattcaattgcccctgttagggctagaagaagatgcaataaagaaaaaggaaaagttgatgaggcagacaatcatgatgaactttgccct |
8547091 |
T |
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| Q |
109 |
tattttgatattcttccatcccacctcaccacccacatttttcttcaacttcctatcaagtctcttctcatatgta |
184 |
Q |
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|||||||||| ||||||||| |||||||| |||||||| | ||| |||||| ||||||||||||||||| |||| |
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| T |
8547092 |
tattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttctcatttgta |
8547167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 8638136 - 8637961
Alignment:
| Q |
15 |
aagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatg--ttgt---- |
108 |
Q |
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||||||| |||||||||| | | || ||||||||||| ||||||||||||||||||||||| |||||| || ||||||||||||| | || | |
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| T |
8638136 |
aagaaaaaagggttcaataactcttgctagggctagcctaagatgcaataaagcaaaagggagagttgatgaatcagaaagtcatgatggactttttcca |
8638037 |
T |
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| Q |
109 |
tattttgatattcttccatcccacctcaccacccacatttttcttcaacttcctatcaagtctcttctcatatgta |
184 |
Q |
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|| ||||||| ||||||||||||| |||||||||| ||| | ||||||||| | || |||||||||||||| |||| |
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| T |
8638036 |
tactttgataatcttccatcccacatcaccacccaaattctgcttcaactttccattaagtctcttctcatttgta |
8637961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 176
Target Start/End: Complemental strand, 9004576 - 9004455
Alignment:
| Q |
58 |
tgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatgttg---ttattttgatattcttccatcccacctcaccacccacatttttcttc |
154 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |||| || ||||||||| |||||||| | ||||||| | |||| |
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| T |
9004576 |
tgcaataaagcaaaagggaaagttgatgaggcagaaagtcatgaactttgcccttactttgctaatcttccatctcacctcactaaccacattctgcttc |
9004477 |
T |
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| Q |
155 |
aacttcctatcaagtctcttct |
176 |
Q |
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| T |
9004476 |
atcttcccattaagtctcttct |
9004455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 8536749 - 8536669
Alignment:
| Q |
15 |
aagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaag |
95 |
Q |
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||||||| | ||||||||| ||||| ||||||| ||| |||| |||||||| |||||||||||||||| ||||||||||| |
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| T |
8536749 |
aagaaaaaaaggttcaattgcccctgctagggctggccaaagacgcaataaatcaaaagggaaagttgatgaggcagaaag |
8536669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 2873494 - 2873566
Alignment:
| Q |
112 |
tttgatattcttccatcccacctcaccacccacatttttcttcaacttcctatcaagtctcttctcatatgta |
184 |
Q |
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||||||| ||||||||| ||| | || ||||||||| ||||||||||||| || |||||||||||||| |||| |
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| T |
2873494 |
tttgataatcttccatctcacttaactacccacattcttcttcaacttcccattaagtctcttctcatgtgta |
2873566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 8678943 - 8678903
Alignment:
| Q |
43 |
agggctagccgaagatgcaataaagcaaaagggaaagttga |
83 |
Q |
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| T |
8678943 |
agggctagcctaagaagcaataaagcaaaagggagagttga |
8678903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 35781057 - 35780917
Alignment:
| Q |
47 |
ctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatgttg---ttattttgatattcttccatcccacctcaccaccca |
143 |
Q |
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|||||| ||||| |||| ||||||| | |||||||| |||||||||||| |||| || ||||||||||| ||||||||||||||||||| |||| |
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| T |
35781057 |
ctagccaaagatacaatgaagcaaactgtaaagttgaagaggcagaaagtgatgacctttacccttattttgataatcttccatcccacctcaccgccca |
35780958 |
T |
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| Q |
144 |
catttttcttcaacttcctatcaagtctcttctcatatgta |
184 |
Q |
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|||||| ||||||||||| || || ||||||||||| |||| |
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| T |
35780957 |
cattttgcttcaacttcccataaaatctcttctcatttgta |
35780917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 48360807 - 48360875
Alignment:
| Q |
108 |
ttattttgatattcttccatcccacctcaccacccacatttttcttcaacttcctatcaagtctcttct |
176 |
Q |
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||||||||||| |||||||| |||||||| |||||||| | ||||||||||| || ||||||||||| |
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| T |
48360807 |
ttattttgataatcttccatatcacctcactgcccacattctccttcaacttcccattaagtctcttct |
48360875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 5131725 - 5131603
Alignment:
| Q |
42 |
tagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatgttg---ttattttgatattcttccatcccacctcacc |
138 |
Q |
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||||||||||| |||| ||||| ||||||||||||||| ||| | |||| ||||| ||| |||||| ||||||||||| ||||||||| |||||||| |
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| T |
5131725 |
tagggctagccaaagaggcaatgaagcaaaagggaaagatgaaggggcaaaaagtaatgcatgttgcccttattttgataatcttccatcacacctcact |
5131626 |
T |
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| Q |
139 |
acccacatttttcttcaacttcc |
161 |
Q |
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|||||||||| ||| ||||||| |
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| T |
5131625 |
gcccacattttgcttaaacttcc |
5131603 |
T |
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