View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13787_low_4 (Length: 814)
Name: NF13787_low_4
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13787_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 704; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 13 - 798
Target Start/End: Complemental strand, 5849129 - 5848347
Alignment:
| Q |
13 |
gatatgaagtcgtgatgggtctccacagttcaaatggtggcttttgaagtaagtaaaacaatggatttttctacactagattttagagagattgtgagct |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5849129 |
gataagaagtcgtgatgggtctccacagttcaaatggtggcttttgaagtaagtaaaacaatggatttttctacactagattttagagagattgtgagct |
5849030 |
T |
|
| Q |
113 |
accacaagaaaatgtaaatgatatgtgagacaagattggatggaggattagaaaagtaacaagaaagaagttgggagaatcaagaaattttcgaactacg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5849029 |
accacaagaaaatgtaaatgatatgtgagacaagattggacggaggattagaaaagtaacaagaaagaagttgggagaatcaagaaattttcgaactacg |
5848930 |
T |
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| Q |
213 |
ggataagaatattggtgatggaacgaaaatgttcaaagttataaataaaatggaatattttaaagattggtctatttgtgaaaatgccgaaaattagaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5848929 |
ggataagaatattggtgatggaacgaaaatgttcaaagttataaataaaatggaatattttaaagattggtctattagtgaaaatgccgaaaattagaaa |
5848830 |
T |
|
| Q |
313 |
aattataagaaagttttctagctttccaaaattttcaaaccgttgcatgcatgtcaaattagagttagcgatttccaatgtttcttgataggagaggatg |
412 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5848829 |
aattttaagaaagttttctagctttccaaatttttcaaactgttgcatgcatgtcaaatcagagttagcgatttccaatgtttcttgataggagaggatg |
5848730 |
T |
|
| Q |
413 |
aagaaaagtaatcaaggagggtgaatggtgattacatttccgcacaaaattactaccatttccagccatctcaaagactataccaaacccttccggcaaa |
512 |
Q |
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| T |
5848729 |
aagaaaagtaatcaaggagggtgaatggtgattacatttccgcacaaaattactcccatttccagccatctcaaagactataccaaacccttccggcaaa |
5848630 |
T |
|
| Q |
513 |
actacgcctcgaaggtattgtatagttgaaccttttttggacatgtcctacctgcattgacagcgttaatgattggtttcgtttaatcagatcttgacac |
612 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5848629 |
actacgcctcgaaggtattgtatagttgaaccttttccggacatgtcctacctgcattgacattgttaatgattggtttcgtttaatcagatcttgacac |
5848530 |
T |
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| Q |
613 |
tatcaacaatgatgtccgagtccaacttgcgtggatcttatcatgagagtgtcgcttgtgtacatgtatgattccagttagggtcgtgatctcataggtt |
712 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5848529 |
tatcaacaatgatgtccgagtccaacttgcgtggatcct---atgagagtgtcgcttgtgtacatgtatgattccggttagggtcgtgatctcataggtt |
5848433 |
T |
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| Q |
713 |
tgcttcatttattagagatgtcttgcacaatccatcaacaaacatatacgtgtgagagttgactaccttaattagtctagagtatg |
798 |
Q |
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| T |
5848432 |
tgcttcatttattattgatgtcttgcacaatccatcaacaaacatacacgtgtgagagttgactaccttaattagtctagagtatg |
5848347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 21913553 - 21913644
Alignment:
| Q |
159 |
attagaaaagtaacaagaaagaagttgggagaatcaagaaattttcgaactacgggataagaat-attggtgatggaacgaaaatgttcaaag |
250 |
Q |
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|||||||||||| ||| | ||||||||||||||||||||| |||| ||||| ||| ||| ||| |||||| | |||||||||||||||||| |
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| T |
21913553 |
attagaaaagtagcaaaagagaagttgggagaatcaagaagtttt-gaacttaggggtaaaaatccttggtggtagaacgaaaatgttcaaag |
21913644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 434
Target Start/End: Complemental strand, 12332518 - 12332453
Alignment:
| Q |
369 |
aattagagttagcgatttccaatgtttcttgataggagaggatgaagaaaagtaatcaaggagggt |
434 |
Q |
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||||||||||||| |||||||||||||||| | |||| || ||||| ||||| ||||||||||| |
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| T |
12332518 |
aattagagttagccgtttccaatgtttcttgcttagagaagaggaagagaagtagtcaaggagggt |
12332453 |
T |
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