View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13787_low_7 (Length: 662)

Name: NF13787_low_7
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13787_low_7
NF13787_low_7
[»] chr7 (5 HSPs)
chr7 (1-581)||(6418-7003)
chr7 (577-645)||(8190-8258)
chr7 (436-565)||(47799254-47799383)
chr7 (469-536)||(48955189-48955256)
chr7 (469-563)||(27132173-27132268)
[»] chr1 (4 HSPs)
chr1 (435-645)||(42645329-42645543)
chr1 (474-558)||(14285832-14285916)
chr1 (469-562)||(30466876-30466969)
chr1 (497-565)||(1013389-1013458)
[»] chr8 (3 HSPs)
chr8 (511-645)||(33688785-33688923)
chr8 (498-561)||(42112454-42112517)
chr8 (501-565)||(28091441-28091506)
[»] chr5 (2 HSPs)
chr5 (469-536)||(5766811-5766878)
chr5 (479-532)||(43588336-43588389)
[»] chr3 (4 HSPs)
chr3 (469-536)||(20313378-20313445)
chr3 (435-565)||(49144731-49144861)
chr3 (497-565)||(42144431-42144500)
chr3 (501-565)||(49756341-49756406)
[»] chr4 (2 HSPs)
chr4 (479-565)||(1013368-1013454)
chr4 (497-533)||(17512157-17512193)
[»] chr6 (1 HSPs)
chr6 (469-550)||(21983238-21983319)
[»] chr2 (1 HSPs)
chr2 (479-532)||(2501801-2501854)


Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 6418 - 7003
Alignment:
Q  1 ttaaagatgtgggaagtggcaaagca------tgagcatgagcattgagcatagacattgttggagagaatatatagatagatgatatcaaagaaaaggg 94  Q
    ||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6418 ttaaagatgtgggaagtggcaaagcatgagcatgagcatgagcattgagcatagacattgttggagagaatatatagatagatgatatcaaagaaaaggg 6517  T
Q  95 aaggaactagctggcagcctagcacacaaaaaagacatatcttttcttaaagattggttacattgatggtccttttgaggaagtttctttgtaactacaa 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6518 aaggaactagctggcagcctagcacacaaaaaagacatatcttttcttaaagattggttacattgatggtccttttgaggaagtttctttgtaactacaa 6617  T
Q  195 aagtttggatggnnnnnnngagaaattttgttttgtaattccagaatccctgaaagctactttcatttctctctcgcccgccactaaggatagaaaatag 294  Q
    ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6618 aagtttggatggaaaaaaagagaaattttgttttgtaattccagaatccctgaaagctactttcatttctctctcgcccgccactaaggatagaaaatag 6717  T
Q  295 accatgttaggctgttatgaactttgcttaaataaattaggtatagttcaaaaattaaataagtctaacnnnnnnnnngagggaaattaagtctaactta 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  6718 accatgttaggctgttatgaactttgcttaaataaattaggtatagttcaaaaattaaataagtctaac-ttttttttgagggaaattaagtctaactta 6816  T
Q  395 ttacattttagaggttttatttcaagtctgatggtctagcggtggcatttagccggggtaagtgaggnnnnnnnccatcatggaaaagttggattttcac 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||||    
T  6817 ttacattttagaggttttatttcaagtctgatggtctagcggtggcatttagccggggtaagtgaggttttttttcatcatgggaaagttggattttcac 6916  T
Q  495 cgttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttctagatctggaatcaaattaatcatccgc 581  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  6917 cattagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttctagatctagaatcaaattaatcttccgc 7003  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 577 - 645
Target Start/End: Original strand, 8190 - 8258
Alignment:
Q  577 tccgctctctttccatgtctcctccactcacccatcaccaccagacaaaagcatttgcttccatcctct 645  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8190 tccgctctctttccatgtctcctccactcacccatcaccaccagacaaaagcatttgcttccatcctct 8258  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 436 - 565
Target Start/End: Original strand, 47799254 - 47799383
Alignment:
Q  436 gtggcatttagccggggtaagtgaggnnnnnnnccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacc 535  Q
    ||||||||||||| |||||||||| |       ||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  47799254 gtggcatttagcctgggtaagtgaagttttttcccatcatgggaaagtttgatttttaccattagattaaagaggtgtattgatcttatcatggtctacc 47799353  T
Q  536 tgtactctattcatcttctagatctggaat 565  Q
    || ||| |||||||| | ||||||| ||||    
T  47799354 tgcactttattcatcctttagatctagaat 47799383  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 469 - 536
Target Start/End: Complemental strand, 48955256 - 48955189
Alignment:
Q  469 ccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacct 536  Q
    ||||||||| |||||| |||||| ||| | |||||||||||||||||||||||||| || ||||||||    
T  48955256 ccatcatgggaaagtttgatttttaccatcagattaaagaggtgtattgatcttataatggtctacct 48955189  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 469 - 563
Target Start/End: Complemental strand, 27132268 - 27132173
Alignment:
Q  469 ccatcatggaaaagttggattttc-accgttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttctagatctgga 563  Q
    ||||||||| ||||||| |||||  ||| ||||||||||| |||||| || ||||||||| ||||| ||||| | |||||||| ||||| ||||||    
T  27132268 ccatcatgggaaagttgaattttttaccattagattaaagtggtgtactggtcttatcatggtctatctgtattttattcatcatctagctctgga 27132173  T

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Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 435 - 645
Target Start/End: Original strand, 42645329 - 42645543
Alignment:
Q  435 ggtggcatttagccggggtaagtgaggnnnnnnnccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctac 534  Q
    |||||||||||||| ||||||||||||        |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  42645329 ggtggcatttagcctgggtaagtgaggttttttctcatcgtgggaaagttggattttcaccattagattaaagaggtgtattgatcttatcatagtttac 42645428  T
Q  535 ctgtactctattcatcttctagatctggaatcaaattaat----catccgctctctttccatgtctcctccactcacccatcaccaccagacaaaagcat 630  Q
    |||||||||||||||||||||||||||||| |||| ||||    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42645429 ctgtactctattcatcttctagatctggaagcaaaataatcttccgtccgctctctttccatgtctcctccactcacccatcaccaccatacaaaagcat 42645528  T
Q  631 ttgcttccatcctct 645  Q
    |||||||||||||||    
T  42645529 ttgcttccatcctct 42645543  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 474 - 558
Target Start/End: Complemental strand, 14285916 - 14285832
Alignment:
Q  474 atggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttctagat 558  Q
    ||||||||||  |||||| ||| |||||||||| ||||||||||| |||||||| |||||||| |||| || ||||| |||||||    
T  14285916 atggaaaagtcagatttttaccattagattaaacaggtgtattgaacttatcatggtctacctatactttaatcatcctctagat 14285832  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 469 - 562
Target Start/End: Complemental strand, 30466969 - 30466876
Alignment:
Q  469 ccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttctagatctgg 562  Q
    ||||||||| ||||||| ||||| ||| |||||||||||  ||||| || |||||||||  |||||||||| | |||||||| ||||| |||||    
T  30466969 ccatcatgggaaagttgaatttttaccattagattaaagtagtgtactggtcttatcatgatctacctgtattttattcatcctctagctctgg 30466876  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 565
Target Start/End: Complemental strand, 1013458 - 1013389
Alignment:
Q  497 ttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttct-agatctggaat 565  Q
    ||||||||| ||||| ||||||||||||||| ||| |||  |||| |||||||| ||| |||||||||||    
T  1013458 ttagattaatgaggtctattgatcttatcatggtccacccatactttattcatcctctaagatctggaat 1013389  T

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Target: chr8 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 511 - 645
Target Start/End: Complemental strand, 33688923 - 33688785
Alignment:
Q  511 tgtattgatcttatcatagtctacctgtactctattcatcttctagatctggaatcaaattaatcatccg----ctctctttccatgtctcctccactca 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    | ||||||||||||||||||||||||    
T  33688923 tgtattgatcttatcatagtctacctgtactctattcatcttctagatctggaatcaaaataatcttccgcccaccctctttccatgtctcctccactca 33688824  T
Q  607 cccatcaccaccagacaaaagcatttgcttccatcctct 645  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  33688823 cccatcaccaccacacaaaagcatttgcttccatcctct 33688785  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 498 - 561
Target Start/End: Complemental strand, 42112517 - 42112454
Alignment:
Q  498 tagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttctagatctg 561  Q
    |||||||||||||||||||||||||| ||| |||||||| |||| |||||||| ||||||||||    
T  42112517 tagattaaagaggtgtattgatcttaccatggtctacctatactttattcatcatctagatctg 42112454  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 565
Target Start/End: Original strand, 28091441 - 28091506
Alignment:
Q  501 attaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttct-agatctggaat 565  Q
    ||||| ||||||||||||||||||||| ||| |||  |||| |||||||| ||| |||||||||||    
T  28091441 attaatgaggtgtattgatcttatcatggtccacccatactttattcatcctctaagatctggaat 28091506  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 469 - 536
Target Start/End: Complemental strand, 5766878 - 5766811
Alignment:
Q  469 ccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacct 536  Q
    ||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||| || ||||||||    
T  5766878 ccatcatgggaaagttggatttttaccatcagattaaagaggtgtattgatcttataatggtctacct 5766811  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 532
Target Start/End: Original strand, 43588336 - 43588389
Alignment:
Q  479 aaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtct 532  Q
    |||||| |||||| ||| ||||||||||||||| ||||||||||||||| ||||    
T  43588336 aaagttagatttttaccattagattaaagaggtctattgatcttatcatggtct 43588389  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 469 - 536
Target Start/End: Complemental strand, 20313445 - 20313378
Alignment:
Q  469 ccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacct 536  Q
    ||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||| || ||||||||    
T  20313445 ccatcatgggaaaattggatttttaccattagattaaagaggtgtattgatcttataatggtctacct 20313378  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 435 - 565
Target Start/End: Original strand, 49144731 - 49144861
Alignment:
Q  435 ggtggcatttagccggggtaagtgaggnnnnnnnccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctac 534  Q
    ||||||||||||||  ||||||||| |       ||| ||| ||||||||| ||||| | | |||||||||||||||||||||||| |||||| |||||     
T  49144731 ggtggcatttagcctaggtaagtgaagttttttcccaacatagaaaagttgaatttttatcattagattaaagaggtgtattgatcatatcatggtctat 49144830  T
Q  535 ctgtactctattcatcttctagatctggaat 565  Q
    ||  ||  |||||||| ||||||||| ||||    
T  49144831 ctacacattattcatcctctagatctagaat 49144861  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 565
Target Start/End: Original strand, 42144431 - 42144500
Alignment:
Q  497 ttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttct-agatctggaat 565  Q
    ||||||||| ||||||||||||||||||||| ||| |||  |||| |||||||| ||| |||||||||||    
T  42144431 ttagattaatgaggtgtattgatcttatcatggtccacccatactttattcatcctctaagatctggaat 42144500  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 565
Target Start/End: Original strand, 49756341 - 49756406
Alignment:
Q  501 attaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttct-agatctggaat 565  Q
    ||||| ||||||||||||||||||||| ||| |||  |||| |||||||| ||| |||||||||||    
T  49756341 attaatgaggtgtattgatcttatcatggtccacccatactttattcatcctctaagatctggaat 49756406  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 479 - 565
Target Start/End: Original strand, 1013368 - 1013454
Alignment:
Q  479 aaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttctagatctggaat 565  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||| ||| ||||  || |||  |||||||| ||||||||||||||    
T  1013368 aaagttggatttttaccattagattaaagagctgtattgatcttaccatggtctttctatacattattcatcctctagatctggaat 1013454  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 533
Target Start/End: Complemental strand, 17512193 - 17512157
Alignment:
Q  497 ttagattaaagaggtgtattgatcttatcatagtcta 533  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  17512193 ttagattaaagaggtgtattgattttatcatggtcta 17512157  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 469 - 550
Target Start/End: Complemental strand, 21983319 - 21983238
Alignment:
Q  469 ccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatc 550  Q
    ||||||||| ||| ||| ||||  ||| ||||||||||||||||||||||||||||||| |||||||| || | ||||||||    
T  21983319 ccatcatgggaaatttgaatttctaccattagattaaagaggtgtattgatcttatcatggtctacctatattttattcatc 21983238  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 532
Target Start/End: Original strand, 2501801 - 2501854
Alignment:
Q  479 aaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtct 532  Q
    ||||||| ||||| ||| || ||||||| |||||||||||||||||||| ||||    
T  2501801 aaagttgaatttttaccatttgattaaaaaggtgtattgatcttatcatggtct 2501854  T

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