View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13787_low_9 (Length: 536)
Name: NF13787_low_9
Description: NF13787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13787_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 133 - 310
Target Start/End: Original strand, 12024613 - 12024793
Alignment:
| Q |
133 |
tcagtttttcctcaataatttggtcagaaaataaataaaaagttagctttcatttttcacatgaaaat---aataagcacatcaattaacagtaatcttg |
229 |
Q |
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| T |
12024613 |
tcagtttttcctcaataatttggtcagaaaataaataaaaagttagctttcatttttcatatgaaaatcagaataagcacatcaattaacagtaatcttg |
12024712 |
T |
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| Q |
230 |
gtcagataaagaaacatattagtcaaaacagtaatttacactataattaaactgattcaacggtcgcttatattcttcgca |
310 |
Q |
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| T |
12024713 |
gtcatataaagaaacatattggtcaaaacagtaatttacactataattaaactgattcaacggtctcttatattcttcgca |
12024793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 407 - 520
Target Start/End: Original strand, 12024884 - 12024997
Alignment:
| Q |
407 |
ggaattacagaaactaaacaatattcacttcgtttctgcaaaatcaaactaaattcaaaattcttagagatagaaagagagttaccttgttgaaccaagg |
506 |
Q |
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| T |
12024884 |
ggaattaaagaaactaaacaatatccaattcgtttctgcaaaatcaaactaaattcaaaattcttagagatagaaagagagttaccttgttgaaccaagg |
12024983 |
T |
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| Q |
507 |
atcgtggaggatat |
520 |
Q |
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| T |
12024984 |
atcgtggaggatat |
12024997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12024465 - 12024527
Alignment:
| Q |
1 |
acgcttgaatatgtttctataattcaaggattatcgtgctacataaagacacttttagggatc |
63 |
Q |
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| T |
12024465 |
acgcttgaatatgtttctataattcaaggattatcgtgctacataaagacacttttaaggatc |
12024527 |
T |
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