View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13788_high_10 (Length: 394)
Name: NF13788_high_10
Description: NF13788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13788_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 47689699 - 47689488
Alignment:
| Q |
10 |
attattctctaattttttaaatata-gtatgctgacgactatacatgtgatatggtttgtagactacaaatatgtctagtttaatacaatttttgggtca |
108 |
Q |
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| T |
47689699 |
attattctctaattttttaaatataagcatgctgacgactatacatgtgatatggtttgtggactacaaatatgtctagtttgatacaatttttgggtca |
47689600 |
T |
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| Q |
109 |
atgtccaatagaagtcactcac--tataatgatctctaagttgttggatgaatttaacagaatcaaatgtgctcacatcatatcaaattaactacaaatc |
206 |
Q |
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| T |
47689599 |
atgtccaatagaagtcactcactatataatgatctctaagttgttggatgaatttaacagaatcaaatgtgctcacatcatatcaaattaactacaaatc |
47689500 |
T |
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| Q |
207 |
caagttgtctgc |
218 |
Q |
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| T |
47689499 |
caagttgtctgc |
47689488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 47689424 - 47689356
Alignment:
| Q |
282 |
aagtttgtacaaatagtactttagttttagtatt-------ggtagtgtcaaaatagtgttcataaaga |
343 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47689424 |
aagtttgtacaaatagtactttagttttagtatttagtatgggtagtgtcaaaatagtgttcataaaga |
47689356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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