View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13788_high_12 (Length: 390)
Name: NF13788_high_12
Description: NF13788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13788_high_12 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 27630267 - 27630655
Alignment:
| Q |
1 |
tgacacgtggacgtgtgagattttgaatccttaactactttgtcggagactttgtttactcaatcatctctataaatatagaatgtaagtaagtagcagc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27630267 |
tgacacgtggacgtgtaagattttgaatccttaactactttgtcggagactttgtttactcaatcatctctataaatatagaatgtaagtaagtagcagc |
27630366 |
T |
|
| Q |
101 |
actatcaaaacattaacagtttatcacttatcatttctatcaaacgcgtatacaacaatatgggtgctcttgatcacatctcagacctctttgactgctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27630367 |
actatcaaaacattaacagtttatcacttatcatttctatcaaacgcgtatacttcaatatgggtgctcttgatcacatctcagacctctttgactgctc |
27630466 |
T |
|
| Q |
201 |
ttacagaagatccacatacaagaagaaacgaaagcaattccaggtaacacaaaattaatcaactctttttaattctattaattcgtattctattctatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27630467 |
ttacagaagatccacatacaagaagaaacgaaagcaattccaggtaacacaaaattaatcaactctttttaattctattaattcgtattctattctatgt |
27630566 |
T |
|
| Q |
301 |
agttaccgatcgaacttgttcatattttttcttcttcaaaataatattattgattttctttaaatcaaaattttcattaaaatataaatt |
390 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27630567 |
agttaccgatcg-acttgttcatattttttcttcttcaaaataatattattgattttctttaaatcaacattttcattaaaatataaatt |
27630655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University