View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13788_high_13 (Length: 385)
Name: NF13788_high_13
Description: NF13788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13788_high_13 |
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| [»] scaffold0831 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 44186586 - 44186228
Alignment:
| Q |
13 |
aatatgcagtaggaaagatagtagagcattgaaataataatggtaaaggaaggttcatatcataaatgtatta--caagaaaacagcaagcccatttcta |
110 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44186586 |
aatatgcagtaggaaagatagaagagcattgaaataataatggtaaaggaaggttcatatcataaatgtattatacaagaaaacagcaagcccatttcta |
44186487 |
T |
|
| Q |
111 |
ttgaaatggcttcagaacattcaacttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgagtgaacgctataaactttggata |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44186486 |
ttgaaatggcttcagaacattcaacttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgagtgaacgctataaagtttggata |
44186387 |
T |
|
| Q |
211 |
cagaaacacccaactcctaattcggcgaaacgaaagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttca |
310 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44186386 |
cagaaacacctaactcctaattcggcgaaacgaaagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttca |
44186287 |
T |
|
| Q |
311 |
attgtttgagtatttaaatcaaaacaagctatttcattgtcattttttataaagaatat |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44186286 |
attgtttgagtatttaaatcaaaacaagctatttcattgtcattttttataaagaatat |
44186228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 13 - 328
Target Start/End: Complemental strand, 4878470 - 4878151
Alignment:
| Q |
13 |
aatatgcagtaggaaagatagtagagcattgaaataataatggtaaaggaaggttcatatcataaatgtat--tacaagaaaac--agcaagcccatttc |
108 |
Q |
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|||||||| || |||||| || ||||||||||||||| |||||||||| ||||||||||||| |||||| | | | | | || |||| |||||||| |
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| T |
4878470 |
aatatgcaatatgaaagagagcagagcattgaaataaaaatggtaaagaaaggttcatatcacaaatgtgtctttctcgtacactaagcatgcccatttg |
4878371 |
T |
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| Q |
109 |
tattgaaatggcttcagaacattcaacttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgagtgaacgctataaactttgga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
4878370 |
tattgaaatggcttcagaacattcaacttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgggtgaacgctataaacttggga |
4878271 |
T |
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| Q |
209 |
tacagaaacacccaactcctaattcggcgaaacgaaagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatctt |
308 |
Q |
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|||||||||||| || ||||||||||||| |||| | ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
4878270 |
tacagaaacacctaattcctaattcggcgtaacggacgaatgttttgcttataaattgcaaagtgacaacaaaaatactcctctttaacacccaaatctt |
4878171 |
T |
|
| Q |
309 |
caattgtttgagtatttaaa |
328 |
Q |
| |
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||||||| || ||||||||| |
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| T |
4878170 |
caattgtgtgggtatttaaa |
4878151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 135 - 369
Target Start/End: Complemental strand, 1327612 - 1327381
Alignment:
| Q |
135 |
cttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgagtgaacgctataaactttggatacagaaacacccaactcctaattcg |
234 |
Q |
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||||| |||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| ||||||| ||||||| || ||||||||| |
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| T |
1327612 |
cttggtaataaaatcttaaatcctaacaacaagaatactcataaagctcttgggtgaaagctataaacttgggatacaaaaacacctaattcctaattcc |
1327513 |
T |
|
| Q |
235 |
gcgaaacgaaagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttgagtatttaaatcaaaa |
334 |
Q |
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| T |
1327512 |
gataaacgaaag---gtttttcttacaaattgcaaagtgacaaaaaaaaggctcccctttaacacccaaatcttcaattgtttgggtatttaaatcaaaa |
1327416 |
T |
|
| Q |
335 |
caagctatttcattgtcattttttataaagaatat |
369 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||| |
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| T |
1327415 |
caagctacttcattgtcattttttagaaagaatat |
1327381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 244 - 355
Target Start/End: Complemental strand, 1328998 - 1328887
Alignment:
| Q |
244 |
aagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttgagtatttaaatcaaaacaagctatt |
343 |
Q |
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|||||| ||||||||||||||||| | | |||||| ||| |||| ||||||||||||| | |||||||| |||| ||||||||||||||||| |||| | |
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| T |
1328998 |
aagaagatttttcttataaattgcgacctcacaacagaaagactcacctttaacacccataccttcaattatttgggtatttaaatcaaaacaggctaat |
1328899 |
T |
|
| Q |
344 |
tcattgtcattt |
355 |
Q |
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||||||||||| |
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| T |
1328898 |
ccattgtcattt |
1328887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 1327777 - 1327716
Alignment:
| Q |
13 |
aatatgcagtaggaaagatagtagagcattgaaataataatggtaaaggaaggttcatatca |
74 |
Q |
| |
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|||||||| |||| |||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1327777 |
aatatgcaataggtaagagagtagagcattgaaataataatggtaaagaaaggttcatatca |
1327716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 4877965 - 4877920
Alignment:
| Q |
324 |
ttaaatcaaaacaagctatttcattgtcattttttataaagaatat |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4877965 |
ttaaatcaaaacaagctatttcattgtcattttttataaagaatat |
4877920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 44187616 - 44187570
Alignment:
| Q |
290 |
cctttaacacccagatcttcaattgtttgagtatttaaatcaaaaca |
336 |
Q |
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||||||||||||| ||||||||||||||| | ||||||||||||||| |
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| T |
44187616 |
cctttaacacccatatcttcaattgtttgggcatttaaatcaaaaca |
44187570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 1327672 - 1327623
Alignment:
| Q |
89 |
gaaaacagcaagcccatttctattgaaatggcttcagaacattcaacttg |
138 |
Q |
| |
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|||||||| ||||| |||| ||||||||||||||||||| |||||||||| |
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| T |
1327672 |
gaaaacagaaagccaatttgtattgaaatggcttcagaatattcaacttg |
1327623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 338
Target Start/End: Complemental strand, 26532590 - 26532496
Alignment:
| Q |
244 |
aagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttgagtatttaaatcaaaacaag |
338 |
Q |
| |
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||||| |||||||| ||||||| |||||| |||| | ||| |||||||||||||||| | ||| |||||| |||| ||||||||||||||||||| |
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| T |
26532590 |
aagaaagtttttctgataaatttcaaagtcacaatataaagactcccctttaacaccaaaatcatcaattctttgggtatttaaatcaaaacaag |
26532496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 1144 - 1248
Alignment:
| Q |
244 |
aagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttgagtatttaaatcaaaacaagctatt |
343 |
Q |
| |
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|||||||||||||||||||||||| |||| |||| | || | | | |||||||||||| ||||||||||||||| ||| |||| ||||||||||| | | |
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| T |
1144 |
aagaaggtttttcttataaattgccaagtcacaatataagtgattcactttaacacccaaatcttcaattgtttgggtaattaagtcaaaacaagccaat |
1243 |
T |
|
| Q |
344 |
tcatt |
348 |
Q |
| |
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||||| |
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|
| T |
1244 |
tcatt |
1248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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