View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13788_high_15 (Length: 337)
Name: NF13788_high_15
Description: NF13788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13788_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 811159 - 810843
Alignment:
| Q |
8 |
atactaagaacaatgaaaaagaggacacatgcatttttgtgaaacttagcatgcattatatataagaaggaaaaacagacaatgcagggtatgaaaagtg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
811159 |
atactaagaacaatgaaaaagaggacacatgcatttttgtgaaacttagcatgcattatagataagaaggaaaaacagacaatgcagggtatgaaaagtg |
811060 |
T |
|
| Q |
108 |
tcatggaacatactcttgttttgagttgaatgcaacttgaaccaaaccttcttcaatggagagaagagggattgcaaccaccccatttgatgaaatgagt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
811059 |
tcatggaacatactcttgttttgagttgaatgcaacttgaaccaaaccttcttcaatggagagaagagggattgcaaccaccccatttgatgaaatgagt |
810960 |
T |
|
| Q |
208 |
gtggcacatgtaggtgtcaattacttgaaggaaatactatgaagagggaaacctgaaatatatagcctttgcttaaacaagggtgaagattttaagaagg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
810959 |
gtggcacatgtaggtgtcaattacttgaaggaaatactaagaagagggaaacctgaaatatatagcctttgcttaaacaagggtgaagattttaagaagg |
810860 |
T |
|
| Q |
308 |
ttgttttacatgttttt |
324 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
810859 |
ttgttttacatgttttt |
810843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 820179 - 820103
Alignment:
| Q |
93 |
agggtatgaaaagtgtcatggaacatactcttgttttgagttgaatgcaacttgaaccaaaccttcttcaatggaga |
169 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| |||| ||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
820179 |
agggtatggaaagtatcatggaacatactcttgatttgggttgaatgcttcttcttccaaaccttcttcaatcgaga |
820103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 840330 - 840257
Alignment:
| Q |
102 |
aaagtgtcatggaacatactcttgttttgagttgaatgcaacttgaaccaaaccttcttcaatggagagaagag |
175 |
Q |
| |
|
||||| ||||||||||||||||| |||| |||||||||| ||| || ||| |||||||||| |||| ||||| |
|
|
| T |
840330 |
aaagtatcatggaacatactcttatttttagttgaatgcttcttcgacaaaaacttcttcaatcgagaaaagag |
840257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 47067392 - 47067489
Alignment:
| Q |
104 |
agtgtcatggaacatactcttgttttgagttgaatgcaacttgaaccaaaccttcttcaatggagagaagagggattgcaaccaccccatttgatgaa |
201 |
Q |
| |
|
||||| || |||| ||||||| ||||||||||||| | ||||| ||| | ||||||| ||||||||| |||||||||| |||||||||||| |||| |
|
|
| T |
47067392 |
agtgtaattgaacgtactcttcttttgagttgaatttagcttgagccatattttcttcagtggagagaaaagggattgcagccaccccatttggtgaa |
47067489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University