View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13788_high_2 (Length: 555)
Name: NF13788_high_2
Description: NF13788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13788_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 250 - 544
Target Start/End: Original strand, 50084891 - 50085185
Alignment:
| Q |
250 |
tattgaaagaaaagggtcacttgccaactgcatatgtattttatgatgattggtaggtactattaattctattcaatagctgtaccattattttagtgca |
349 |
Q |
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| T |
50084891 |
tattgaaagaaaagggtcgcttgccaactgcatatgtattttatgatgattggtaggtactattaattctattcaatagctgtaccattattttagtgca |
50084990 |
T |
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| Q |
350 |
caatcagaagttaattattatgattgcttttatccaacattctgcatttatgcaccacatcaaaattttagtgctaaaaacattttaggtcatgcacaat |
449 |
Q |
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| T |
50084991 |
caatcagaaattaattattatgattgcttttatccaacattctgcatttatgtaccacatcaaaattttagtgctaaaaacattttaggtcatgcacaat |
50085090 |
T |
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| Q |
450 |
cagagtactaaaaataaatatttaatcgtgttaaacgagctaatcatatttacaaaatcaatttataagatgaaagttgtcgcctattaattcat |
544 |
Q |
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| T |
50085091 |
cagagtactaaaaataaatatttagtcgtgttaaacgagctaatcatacttacaaaatcaatttataagatgagagttgtcgcctattaattcat |
50085185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 50084665 - 50084814
Alignment:
| Q |
22 |
ccgttatcatggagtaccagacccgtcaacaacatccccttgccaataacagtcacaaaaaccagagaggaacacaaaggaaccatcaatttaatgcaat |
121 |
Q |
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| T |
50084665 |
ccgttatcatgga---ccagacccgtcaacaacatccccttgccaataacagtcacaaaaaccagagaggaacacaaaggaaccatcaatttaatgcaat |
50084761 |
T |
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| Q |
122 |
ggatatacttactaccaaatgaaagagcaattgaaaactaccatatcttcctc |
174 |
Q |
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| T |
50084762 |
ggatatacttactaccaaatgaaagagcaattgaaaactaccatatcttcctc |
50084814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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