View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13788_high_3 (Length: 480)

Name: NF13788_high_3
Description: NF13788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13788_high_3
NF13788_high_3
[»] chr8 (18 HSPs)
chr8 (162-400)||(17987626-17987864)
chr8 (12-132)||(17987935-17988055)
chr8 (441-480)||(30942650-30942689)
chr8 (437-480)||(7540539-7540582)
chr8 (223-290)||(17105978-17106045)
chr8 (432-479)||(40249932-40249979)
chr8 (437-476)||(43875032-43875071)
chr8 (437-478)||(26703943-26703984)
chr8 (432-480)||(2376514-2376562)
chr8 (432-480)||(3379697-3379745)
chr8 (432-480)||(8034526-8034574)
chr8 (432-480)||(9524953-9525001)
chr8 (432-480)||(15042416-15042464)
chr8 (432-480)||(23857375-23857423)
chr8 (432-480)||(24608534-24608582)
chr8 (432-480)||(25119204-25119252)
chr8 (432-480)||(28465614-28465662)
chr8 (432-480)||(39484421-39484469)
[»] chr7 (12 HSPs)
chr7 (432-480)||(28694237-28694285)
chr7 (432-480)||(2366353-2366401)
chr7 (432-480)||(22966009-22966057)
chr7 (432-480)||(23685605-23685653)
chr7 (437-480)||(2261535-2261578)
chr7 (437-476)||(24479584-24479623)
chr7 (437-480)||(38025342-38025385)
chr7 (432-478)||(4104476-4104522)
chr7 (430-480)||(5787455-5787505)
chr7 (426-480)||(38778730-38778784)
chr7 (432-480)||(25818282-25818330)
chr7 (432-480)||(29778977-29779025)
[»] chr5 (12 HSPs)
chr5 (432-480)||(20945942-20945990)
chr5 (432-480)||(29266064-29266112)
chr5 (437-480)||(23925544-23925587)
chr5 (432-480)||(22599986-22600034)
chr5 (432-480)||(33800889-33800937)
chr5 (437-480)||(29106089-29106132)
chr5 (431-480)||(18872516-18872565)
chr5 (434-479)||(27440350-27440395)
chr5 (432-480)||(9176837-9176885)
chr5 (432-480)||(32158465-32158513)
chr5 (432-480)||(36888144-36888192)
chr5 (432-480)||(42595737-42595785)
[»] chr3 (9 HSPs)
chr3 (437-480)||(33072291-33072334)
chr3 (432-480)||(2564917-2564965)
chr3 (432-480)||(14417864-14417912)
chr3 (437-476)||(48516142-48516181)
chr3 (437-479)||(41121872-41121914)
chr3 (430-480)||(49146078-49146128)
chr3 (439-480)||(34344828-34344869)
chr3 (432-480)||(32508845-32508893)
chr3 (432-480)||(33206753-33206801)
[»] scaffold0006 (1 HSPs)
scaffold0006 (432-480)||(159010-159058)
[»] chr4 (18 HSPs)
chr4 (432-480)||(9172422-9172470)
chr4 (432-480)||(9285710-9285758)
chr4 (432-480)||(52560760-52560808)
chr4 (432-480)||(56546500-56546548)
chr4 (437-480)||(49280720-49280763)
chr4 (439-480)||(3465586-3465627)
chr4 (439-480)||(35803144-35803185)
chr4 (432-480)||(534816-534864)
chr4 (432-480)||(21476132-21476180)
chr4 (432-480)||(33944414-33944462)
chr4 (443-479)||(42558908-42558944)
chr4 (432-480)||(43606151-43606199)
chr4 (439-479)||(45350279-45350319)
chr4 (439-479)||(45359758-45359798)
chr4 (432-480)||(46735020-46735068)
chr4 (432-480)||(47017997-47018045)
chr4 (432-480)||(50657876-50657924)
chr4 (432-480)||(50783485-50783533)
[»] chr2 (12 HSPs)
chr2 (432-480)||(10262735-10262783)
chr2 (432-480)||(31564091-31564139)
chr2 (437-480)||(26807135-26807178)
chr2 (432-475)||(33956252-33956295)
chr2 (426-480)||(3179314-3179368)
chr2 (427-476)||(20122530-20122579)
chr2 (432-480)||(580834-580882)
chr2 (432-476)||(15392266-15392310)
chr2 (432-480)||(17154645-17154693)
chr2 (432-480)||(22538535-22538583)
chr2 (432-480)||(30474246-30474294)
chr2 (432-476)||(37245374-37245418)
[»] chr1 (14 HSPs)
chr1 (432-480)||(5172653-5172701)
chr1 (432-480)||(20357456-20357504)
chr1 (432-480)||(20562451-20562499)
chr1 (432-480)||(21884571-21884619)
chr1 (432-480)||(24661978-24662026)
chr1 (432-480)||(37490886-37490934)
chr1 (437-480)||(19793527-19793570)
chr1 (437-480)||(49251446-49251489)
chr1 (432-480)||(11067435-11067483)
chr1 (432-476)||(15774367-15774411)
chr1 (432-480)||(18923936-18923984)
chr1 (432-480)||(38019999-38020047)
chr1 (432-480)||(42831943-42831991)
chr1 (432-480)||(43092149-43092197)
[»] scaffold1086 (1 HSPs)
scaffold1086 (432-479)||(2484-2531)
[»] chr6 (8 HSPs)
chr6 (437-480)||(5288396-5288439)
chr6 (432-479)||(30566054-30566101)
chr6 (432-479)||(32057030-32057077)
chr6 (439-480)||(23771036-23771077)
chr6 (432-476)||(9491790-9491834)
chr6 (432-480)||(12089093-12089141)
chr6 (432-480)||(22389801-22389849)
chr6 (432-480)||(22501014-22501062)
[»] scaffold0334 (1 HSPs)
scaffold0334 (438-480)||(5306-5348)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 162 - 400
Target Start/End: Complemental strand, 17987864 - 17987626
Alignment:
Q  162 aatctgaataactttatcttttaatttgaaattttggtgtagttaactcttgtggaaattgatgcttcacaatctgaagaagaatattggaaatccgttt 261  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17987864 aatctgaataactttttcttttaatttgaaattttggtgtagttaactcttgtggaaattgatgcttcacaatctgaagaagaatattggaaatccgttt 17987765  T
Q  262 ggccaaacacttctatgccgaagactctcctcgacctatttatttcgggttagaccccctttgttatttttgattgtctatattttagaaatattgttac 361  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17987764 ggccaaacacttctatgccgaagactctcctcgacctgtttatttcgggttagaccccttttgttatttttgattgtctatattttagaaatattgttac 17987665  T
Q  362 caattatgccatgatttcaatgttcaaggttaaattatg 400  Q
     ||||||||||||||||||||||||||||||| ||||||    
T  17987664 taattatgccatgatttcaatgttcaaggttacattatg 17987626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 17988055 - 17987935
Alignment:
Q  12 aatcataacaaagtcgaatcgagtttcgacttattcaatttttatcgagtcgatccaagctgaatctgatttggctcaggtcgactctttctagccttgg 111  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  17988055 aatcataacaaagtcgagtcgagtttcgacttattcaatttttatcgagttgatccaagctgaatctgatttggctcggctcgactctttctagccttgg 17987956  T
Q  112 aaattatatacatcatgaaat 132  Q
    |||||||||||||||||||||    
T  17987955 aaattatatacatcatgaaat 17987935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 441 - 480
Target Start/End: Complemental strand, 30942689 - 30942650
Alignment:
Q  441 cataactcaattgataggacagtgcattattatatgcagg 480  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  30942689 cataactcaattgataggacaatgcattattatatgcagg 30942650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 7540582 - 7540539
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  7540582 tgagcataactcacttggtaggacaatgcattattatatgcagg 7540539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 17105978 - 17106045
Alignment:
Q  223 atgcttcacaatctgaagaagaatattggaaatccgtttggccaaacacttctatgccgaagactctc 290  Q
    ||||||||||||| |  ||||| ||||||||| || |||||||||||||| ||||||| ||| |||||    
T  17105978 atgcttcacaatcgggggaagattattggaaaaccatttggccaaacactcctatgcctaaggctctc 17106045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 479
Target Start/End: Complemental strand, 40249979 - 40249932
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcag 479  Q
    |||| ||||||||||||| ||| ||||||| |||||||||||||||||    
T  40249979 tcccgtgagcataactcagttggtaggacaatgcattattatatgcag 40249932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 476
Target Start/End: Complemental strand, 43875071 - 43875032
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatg 476  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  43875071 tgagcataactcagttgataggacaatgcattattatatg 43875032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 478
Target Start/End: Complemental strand, 26703984 - 26703943
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatgca 478  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||    
T  26703984 tgagcataactcagttggtaggacaatgcattattatatgca 26703943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 2376514 - 2376562
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||  ||||||| ||||||| ||||||||||||||||||    
T  2376514 tcccgtgagcatagttcaattggtaggacaatgcattattatatgcagg 2376562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 3379745 - 3379697
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||| ||||||||| | |||||| |||||||||||    
T  3379745 tcccgtgagcataactcagttgataggataatgcattgttatatgcagg 3379697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 8034526 - 8034574
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||  || |||||||| ||||||||||||||||||    
T  8034526 tcccgtgagcataactccgttaataggacaatgcattattatatgcagg 8034574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 9524953 - 9525001
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  9524953 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 9525001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 15042464 - 15042416
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  15042464 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 15042416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 23857423 - 23857375
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  23857423 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 23857375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 24608582 - 24608534
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  24608582 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 24608534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 25119204 - 25119252
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||  ||||||| ||||||| ||||||||||||||||||    
T  25119204 tcccgtgagcatagttcaattggtaggacaatgcattattatatgcagg 25119252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 28465614 - 28465662
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  28465614 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 28465662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 39484469 - 39484421
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  39484469 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 39484421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 28694285 - 28694237
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||    
T  28694285 tcccatgagcatagctcagttgataggacagtgcattattatatgcagg 28694237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 2366353 - 2366401
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||| |||||||| ||||||||||| ||||||||||||||||||    
T  2366353 tcccgtgagtataactcagttgataggacaatgcattattatatgcagg 2366401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 22966057 - 22966009
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||||||| ||||||| ||||||||||||||||||    
T  22966057 tcccgtgagcatagctcaattggtaggacaatgcattattatatgcagg 22966009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 23685653 - 23685605
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||||||||||| ||||||||||||||||||    
T  23685653 tcccatgagcatagctcagttgataggacaatgcattattatatgcagg 23685605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 2261578 - 2261535
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||||||| |||||||| ||||||| ||||||||||||||||||    
T  2261578 tgagcatagctcaattggtaggacaatgcattattatatgcagg 2261535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 476
Target Start/End: Original strand, 24479584 - 24479623
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatg 476  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  24479584 tgagcatagctcaattggtaggacagtgcattattatatg 24479623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 480
Target Start/End: Original strand, 38025342 - 38025385
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||    
T  38025342 tgagcatagctcatttgataggacaatgcattattatatgcagg 38025385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 478
Target Start/End: Original strand, 4104476 - 4104522
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgca 478  Q
    |||| |||||||| |||||||| ||||||| ||||||||||||||||    
T  4104476 tcccgtgagcatagctcaattgttaggacaatgcattattatatgca 4104522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 480
Target Start/End: Original strand, 5787455 - 5787505
Alignment:
Q  430 tatcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||||| |||| ||| |||||||| ||||||| ||||||||||||||||||    
T  5787455 tatcccgtgagtatagctcaattggtaggacaatgcattattatatgcagg 5787505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 480
Target Start/End: Complemental strand, 38778784 - 38778730
Alignment:
Q  426 taattatcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    ||||| |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  38778784 taattgtcccgtgagcatatctcagttggtaggacaatgcattattatatgcagg 38778730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 25818282 - 25818330
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||| ||| ||||| | ||||||||||||||||||    
T  25818282 tcccgtgagcataactcagttggtaggataatgcattattatatgcagg 25818330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 29778977 - 29779025
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||||||| ||||| | ||||||||||||||||||    
T  29778977 tcccgtgagcatagctcaattggtaggataatgcattattatatgcagg 29779025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 20945990 - 20945942
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||||||||    
T  20945990 tcccgtgagcataactcaattggtaggacaatgcattattatatgcagg 20945942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 29266064 - 29266112
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  29266064 tcccgtgagcatagctcaattgataggacaatgcattattatatgcagg 29266112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 437 - 480
Target Start/End: Original strand, 23925544 - 23925587
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||    
T  23925544 tgagcataactcagttgataggacaatgcattattatatgcagg 23925587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 22600034 - 22599986
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  22600034 tcccgtgagcataactcagttggtaggacaatgcattattatatgcagg 22599986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 33800889 - 33800937
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  33800889 tcccgtgagcataactcagttggtaggacaatgcattattatatgcagg 33800937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 29106132 - 29106089
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||||||| |||||||| ||||||| ||||||||||||||||||    
T  29106132 tgagcatagctcaattggtaggacaatgcattattatatgcagg 29106089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 18872516 - 18872565
Alignment:
Q  431 atcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    ||||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  18872516 atcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 18872565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 27440395 - 27440350
Alignment:
Q  434 ccctgagcataactcaattgataggacagtgcattattatatgcag 479  Q
    ||||||||||| |||| ||| ||||||| |||||||||||||||||    
T  27440395 ccctgagcatagctcagttggtaggacaatgcattattatatgcag 27440350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 9176885 - 9176837
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||| |||  |||||| ||||||||||||||||||    
T  9176885 tcccgtgagcataactcagttggaaggacaatgcattattatatgcagg 9176837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 32158513 - 32158465
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||| || |||||||| ||||||| ||||||||||||||||||    
T  32158513 tcccgtgagcttagctcaattggtaggacaatgcattattatatgcagg 32158465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 36888192 - 36888144
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  36888192 tcccgtgagcatatctcagttggtaggacaatgcattattatatgcagg 36888144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 42595737 - 42595785
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||||||| ||||||| | ||||||||||||||||    
T  42595737 tcccgtgagcatagctcaattggtaggacaatacattattatatgcagg 42595785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 437 - 480
Target Start/End: Original strand, 33072291 - 33072334
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||    
T  33072291 tgagcataactcagttgataggacaatgcattattatatgcagg 33072334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 2564917 - 2564965
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||| ||| ||| ||||||||||||||||||||||    
T  2564917 tcccgtgagcataactcagttggtagaacagtgcattattatatgcagg 2564965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 14417864 - 14417912
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||||||| ||||||| ||||||||||||||||||    
T  14417864 tcccatgagcatagctcaattggtaggacaatgcattattatatgcagg 14417912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 476
Target Start/End: Complemental strand, 48516181 - 48516142
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatg 476  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  48516181 tgagcataactcaattgataggacaatacattattatatg 48516142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 437 - 479
Target Start/End: Original strand, 41121872 - 41121914
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatgcag 479  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||    
T  41121872 tgagcataactcagttggtaggacaatgcattattatatgcag 41121914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 480
Target Start/End: Original strand, 49146078 - 49146128
Alignment:
Q  430 tatcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||||| ||||| ||||||| ||| ||||||| ||||||||||||||||||    
T  49146078 tatcccgtgagcttaactcagttggtaggacaatgcattattatatgcagg 49146128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 480
Target Start/End: Complemental strand, 34344869 - 34344828
Alignment:
Q  439 agcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||||| |||| ||||||||||| ||||||||||||||||||    
T  34344869 agcatagctcagttgataggacaatgcattattatatgcagg 34344828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 32508893 - 32508845
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||| ||||||| ||||||||| | ||||||||||||||||||    
T  32508893 tcccgtgagcctaactcagttgataggataatgcattattatatgcagg 32508845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 33206753 - 33206801
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  33206753 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 33206801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 159010 - 159058
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  159010 tcccatgagcataactcagttggtaggacaatgcattattatatgcagg 159058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 9172470 - 9172422
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  9172470 tcccgtgagcataactcagttggtaggacaatgcattattatatgcagg 9172422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 9285758 - 9285710
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||||||| ||||||| ||||||||||||||||||    
T  9285758 tcccgtgagcatagctcaattggtaggacaatgcattattatatgcagg 9285710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 52560760 - 52560808
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||||||| ||||||| ||||||||||||||||||    
T  52560760 tcccgtgagcatagctcaattggtaggacaatgcattattatatgcagg 52560808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 56546548 - 56546500
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||||||| ||||||| ||||||||||||||||||    
T  56546548 tcccgtgagcatagctcaattggtaggacaatgcattattatatgcagg 56546500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 49280763 - 49280720
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    ||||||||||||||||| ||||||| || |||||||||||||||    
T  49280763 tgagcataactcaattggtaggacaatgaattattatatgcagg 49280720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 480
Target Start/End: Original strand, 3465586 - 3465627
Alignment:
Q  439 agcataactcaattgataggacagtgcattattatatgcagg 480  Q
    ||||||||||| ||| ||||||| ||||||||||||||||||    
T  3465586 agcataactcagttggtaggacaatgcattattatatgcagg 3465627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 480
Target Start/End: Complemental strand, 35803185 - 35803144
Alignment:
Q  439 agcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||||| |||||||| ||||||| ||||||||||||||||||    
T  35803185 agcatagctcaattggtaggacaatgcattattatatgcagg 35803144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 534864 - 534816
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||||||| ||||||| ||||| ||||||||||||    
T  534864 tcccgtgagcatagctcaattggtaggacaatgcatcattatatgcagg 534816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 21476180 - 21476132
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||||||||| | ||||||||||||||||||    
T  21476180 tcccgtgagcatagctcagttgataggatattgcattattatatgcagg 21476132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 33944462 - 33944414
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||| ||| ||||| | ||||||||||||||||||    
T  33944462 tcccgtgagcataactcagttggtaggataatgcattattatatgcagg 33944414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 479
Target Start/End: Complemental strand, 42558944 - 42558908
Alignment:
Q  443 taactcaattgataggacagtgcattattatatgcag 479  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  42558944 taactcagttgataggacaatgcattattatatgcag 42558908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 43606199 - 43606151
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||| |||| |||| ||||||||||| ||||||||||||||||||    
T  43606199 tcccgtgaacatagctcagttgataggacaatgcattattatatgcagg 43606151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 479
Target Start/End: Original strand, 45350279 - 45350319
Alignment:
Q  439 agcataactcaattgataggacagtgcattattatatgcag 479  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  45350279 agcatagctcagttggtaggacagtgcattattatatgcag 45350319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 479
Target Start/End: Original strand, 45359758 - 45359798
Alignment:
Q  439 agcataactcaattgataggacagtgcattattatatgcag 479  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  45359758 agcatagctcagttggtaggacagtgcattattatatgcag 45359798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 46735068 - 46735020
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  46735068 tcccgtgagcatagctcagttggtaggacactgcattattatatgcagg 46735020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 47018045 - 47017997
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  47018045 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 47017997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 50657876 - 50657924
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  50657876 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 50657924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 50783533 - 50783485
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  50783533 tcccgtgagcatagctcagttggtaggacattgcattattatatgcagg 50783485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 10262735 - 10262783
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  10262735 tcccgtgagcataactcagttggtaggacaatgcattattatatgcagg 10262783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 31564091 - 31564139
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  31564091 tcccgtgagcataactcagttggtaggacaatgcattattatatgcagg 31564139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 26807178 - 26807135
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  26807178 tgagcataactcagttggtaggacaatgcattattatatgcagg 26807135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 475
Target Start/End: Original strand, 33956252 - 33956295
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatat 475  Q
    |||| ||||||||||||||||| ||||||| |||||||||||||    
T  33956252 tcccgtgagcataactcaattggtaggacaatgcattattatat 33956295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 480
Target Start/End: Original strand, 3179314 - 3179368
Alignment:
Q  426 taattatcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    ||||| |||| ||||||||||||| ||| ||| ||| ||||||||||||||||||    
T  3179314 taattgtcccgtgagcataactcagttggtagaacaatgcattattatatgcagg 3179368  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 476
Target Start/End: Complemental strand, 20122579 - 20122530
Alignment:
Q  427 aattatcccctgagcataactcaattgataggacagtgcattattatatg 476  Q
    ||||||||| |||||||| |||| ||| ||||||| ||||||||||||||    
T  20122579 aattatcccgtgagcatagctcagttggtaggacaatgcattattatatg 20122530  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 580882 - 580834
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  580882 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 580834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 476
Target Start/End: Complemental strand, 15392310 - 15392266
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatg 476  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||    
T  15392310 tcccgtgagcataactcagttggtaggacaatgcattattatatg 15392266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 17154645 - 17154693
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||  ||| ||||||| ||||||||||||||||||    
T  17154645 tcccgtgagcataactcggttggtaggacaatgcattattatatgcagg 17154693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 22538535 - 22538583
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||| ||||||| ||| ||||||| ||||||||||||||||||    
T  22538535 tcccgtgagcctaactcagttggtaggacaatgcattattatatgcagg 22538583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 30474294 - 30474246
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  30474294 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 30474246  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 476
Target Start/End: Original strand, 37245374 - 37245418
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatg 476  Q
    |||| ||| |||| |||||||| ||||||||||||||||||||||    
T  37245374 tcccatgatcatagctcaattggtaggacagtgcattattatatg 37245418  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 5172701 - 5172653
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||||||||||| ||||||||||||||||||    
T  5172701 tcccgtgagcatagctcagttgataggacaatgcattattatatgcagg 5172653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 20357456 - 20357504
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  20357456 tcccgtgagcataactcagttggtaggacaatgcattattatatgcagg 20357504  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 20562499 - 20562451
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  20562499 tcccgtgagcataactcagttggtaggacaatgcattattatatgcagg 20562451  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 21884571 - 21884619
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||||||| ||||||| ||||||||||||||||||    
T  21884571 tcccgtgagcatagctcaattggtaggacaatgcattattatatgcagg 21884619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 24661978 - 24662026
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||||||| ||||||| ||||||||||||||||||    
T  24661978 tcccgtgagcatagctcaattggtaggacaatgcattattatatgcagg 24662026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 37490886 - 37490934
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  37490886 tcccgtgagcataactcagttggtaggacaatgcattattatatgcagg 37490934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 480
Target Start/End: Original strand, 19793527 - 19793570
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  19793527 tgagcataactcagttggtaggacaatgcattattatatgcagg 19793570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 49251489 - 49251446
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  49251489 tgagcataactcagttggtaggacaatgcattattatatgcagg 49251446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 11067435 - 11067483
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||| | ||| |||||||||||||||| |||||||||    
T  11067435 tcccgtgagcataacttagttggtaggacagtgcattataatatgcagg 11067483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 476
Target Start/End: Complemental strand, 15774411 - 15774367
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatg 476  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||    
T  15774411 tcccgtgagcataactcagttggtaggacaatgcattattatatg 15774367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 18923984 - 18923936
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  18923984 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 18923936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 38020047 - 38019999
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  38020047 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 38019999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 42831943 - 42831991
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  42831943 tcccgtgagcatagctcagttggtaggacattgcattattatatgcagg 42831991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 43092149 - 43092197
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| ||||||||||||||||| ||||| | | ||||||||||||||||    
T  43092149 tcccatgagcataactcaattggtaggataatacattattatatgcagg 43092197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1086 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1086
Description:

Target: scaffold1086; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 479
Target Start/End: Original strand, 2484 - 2531
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcag 479  Q
    |||| ||||||||||||| ||| ||||||| |||||||||||||||||    
T  2484 tcccgtgagcataactcagttggtaggacaatgcattattatatgcag 2531  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 5288439 - 5288396
Alignment:
Q  437 tgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  5288439 tgagcataactcagttggtaggacaatgcattattatatgcagg 5288396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 479
Target Start/End: Original strand, 30566054 - 30566101
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcag 479  Q
    |||| ||||||||||||| ||| ||||||| |||||||||||||||||    
T  30566054 tcccgtgagcataactcagttggtaggacaatgcattattatatgcag 30566101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 479
Target Start/End: Original strand, 32057030 - 32057077
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcag 479  Q
    |||| |||||||| |||| ||||||||||| |||||||||||||||||    
T  32057030 tcccgtgagcatagctcagttgataggacaatgcattattatatgcag 32057077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 480
Target Start/End: Original strand, 23771036 - 23771077
Alignment:
Q  439 agcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||||| |||||||| ||||||| ||||||||||||||||||    
T  23771036 agcatagctcaattggtaggacaatgcattattatatgcagg 23771077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 476
Target Start/End: Complemental strand, 9491834 - 9491790
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatg 476  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||    
T  9491834 tcccgtgagcataactcagttggtaggacaatgcattattatatg 9491790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 12089093 - 12089141
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  12089093 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 12089141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 22389849 - 22389801
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  22389849 tcccgtgagcatagctcagttggtaggacaatgcattattatatgcagg 22389801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 22501014 - 22501062
Alignment:
Q  432 tcccctgagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    |||| |||||||| |||| ||| ||||||| ||||||||||||||||||    
T  22501014 tcccatgagcatagctcagttggtaggacaatgcattattatatgcagg 22501062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 438 - 480
Target Start/End: Original strand, 5306 - 5348
Alignment:
Q  438 gagcataactcaattgataggacagtgcattattatatgcagg 480  Q
    ||||||| |||||||| ||||||| ||||||||||||||||||    
T  5306 gagcatagctcaattggtaggacaatgcattattatatgcagg 5348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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