View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13788_low_12 (Length: 390)
Name: NF13788_low_12
Description: NF13788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13788_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 27630267 - 27630655
Alignment:
| Q |
1 |
tgacacgtggacgtgtgagattttgaatccttaactactttgtcggagactttgtttactcaatcatctctataaatatagaatgtaagtaagtagcagc |
100 |
Q |
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| T |
27630267 |
tgacacgtggacgtgtaagattttgaatccttaactactttgtcggagactttgtttactcaatcatctctataaatatagaatgtaagtaagtagcagc |
27630366 |
T |
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| Q |
101 |
actatcaaaacattaacagtttatcacttatcatttctatcaaacgcgtatacaacaatatgggtgctcttgatcacatctcagacctctttgactgctc |
200 |
Q |
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| T |
27630367 |
actatcaaaacattaacagtttatcacttatcatttctatcaaacgcgtatacttcaatatgggtgctcttgatcacatctcagacctctttgactgctc |
27630466 |
T |
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| Q |
201 |
ttacagaagatccacatacaagaagaaacgaaagcaattccaggtaacacaaaattaatcaactctttttaattctattaattcgtattctattctatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27630467 |
ttacagaagatccacatacaagaagaaacgaaagcaattccaggtaacacaaaattaatcaactctttttaattctattaattcgtattctattctatgt |
27630566 |
T |
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| Q |
301 |
agttaccgatcgaacttgttcatattttttcttcttcaaaataatattattgattttctttaaatcaaaattttcattaaaatataaatt |
390 |
Q |
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| T |
27630567 |
agttaccgatcg-acttgttcatattttttcttcttcaaaataatattattgattttctttaaatcaacattttcattaaaatataaatt |
27630655 |
T |
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