View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13788_low_14 (Length: 361)
Name: NF13788_low_14
Description: NF13788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13788_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 36333511 - 36333843
Alignment:
| Q |
10 |
attattctcatataacagcaatgcacagaagggtaaaactcatttttctcaaattattcatcttatccaataacaaaaaccaacaaactacaacacctat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
36333511 |
attattctcatataacagcaatgcacagaagggtaaaactcatttttctcaaattattcatcttatccaataacaaaaaccaacaaactacaaaaccttt |
36333610 |
T |
|
| Q |
110 |
tataaatatactatatcattgttgtacacaacaatgcagaattttgacaaaatgacacggattacttcacaatactgagaacttgatggtgaaaaattga |
209 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36333611 |
tataaatatgctatatcattgttgtacacaacaatgcagaattttgacaaaatgacacggattacttcacaatactgagaacttgatggtgaaaaattga |
36333710 |
T |
|
| Q |
210 |
gacagcaaacctacaaagggtcatgacttttcctttagaccatctctagggcaggatcaatttcttcaacattaattcaaaagtgtagcaacacaatcca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36333711 |
gacagcaaacctacaaagggtcatgacttttcctttagaccatctctagggcaggatcaattacttcaacattaattcaaaagtgtagcaacacaatcca |
36333810 |
T |
|
| Q |
310 |
ttatttctaaattaatatctgcaggcaccacaa |
342 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
36333811 |
ttatttccaaattaatatctgcaggcaccacaa |
36333843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University