View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13788_low_17 (Length: 299)
Name: NF13788_low_17
Description: NF13788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13788_low_17 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 22955091 - 22955363
Alignment:
| Q |
10 |
attattcttatatgaagttgggtttagnnnnnnnggtgtgatatttttgtaatataggacatgataataccaccagatttatgagatagttaaacactat |
109 |
Q |
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| T |
22955091 |
attattcttatatgaagttgggtttagaaaaaaaggtgtgatatttttgtaatataggacatgataataccaccagatttatgagatagttaaacactat |
22955190 |
T |
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| Q |
110 |
aaatacaactattttctacctaatttcatttcatttttgtcatcttagagtacaaaacaataaatacaaggtccatgaaattatagataaaaaatacagt |
209 |
Q |
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| T |
22955191 |
aaatacaactattttctacctaatttcatttcatttttgtgatcttagagtacaaaacaataaatacaaggtccatgaaattatagataaaaaatacagt |
22955290 |
T |
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| Q |
210 |
tattgggtgcatgcacaaataatatattagagcttgaggaatattctagaaaatatatattgtacaactatct |
282 |
Q |
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| T |
22955291 |
tattgggtgcatgcacaaataatatattagagcttgaggaatattctagaaaatatatattgtacaactatct |
22955363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 46 - 280
Target Start/End: Complemental strand, 200484 - 200242
Alignment:
| Q |
46 |
tgtgatatttttgtaatataggacatgataataccaccagatttatgagatagttaaacactataaatacaactattttctacctaatttcatttcattt |
145 |
Q |
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||||||||||||||||| |||| ||| | ||||||||| |||||||||||| ||||||||||||| | ||| | ||||||| |||||||||||||||| |
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| T |
200484 |
tgtgatatttttgtaatgtaggccatagtgataccaccatatttatgagataagtaaacactataaacaaaacaaatttctacttaatttcatttcattt |
200385 |
T |
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| Q |
146 |
ttgtcatcttag--------agtacaaaacaataaatacaaggtccatgaaattatagataaaaaatacagttattgggtgcatgcacaaataatatatt |
237 |
Q |
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| T |
200384 |
ttgtcatcttagcatcttagagtacaatacaataaatacaaggtccatgaaattacagataaaaaatccagttattgggtgcatgcacaaacagtatatt |
200285 |
T |
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| Q |
238 |
agagcttgaggaatattctagaaaatatatattgtacaactat |
280 |
Q |
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| T |
200284 |
agagcttgtggaatattctagaaaagatatattgtacaactat |
200242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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