View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13788_low_18 (Length: 269)
Name: NF13788_low_18
Description: NF13788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13788_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 280140 - 280381
Alignment:
| Q |
11 |
cagagatggtggcttcatgaacttccaatggacaaatgttaattggaaagttagtcagaaaaatcaaacttaggtatgatttaggggatacatagagatt |
110 |
Q |
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| T |
280140 |
cagagatggtggcttcatgaacttccaatggacaaatgttaattggaaagttagtcagaaaaatcaaacttaggtatgatttaagggatacatagagatt |
280239 |
T |
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| Q |
111 |
gtaatttcagttaatgaagtggacattcatttatgtcatgttta-tgatttcttagatatgattgttgttcttgattaatcggtggtataatttacaagt |
209 |
Q |
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| T |
280240 |
gtaatttcagttaatgaagtggacatccatttatgtcatgtttagtgatttcttagatatgattgttgttcttgattaatcggtggtataatttacaagt |
280339 |
T |
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| Q |
210 |
ttggaacctatatgacaatgtagttaagagagagcatatttg |
251 |
Q |
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| T |
280340 |
ttggaacctatatgacaatgtagttaagagagagcatatttg |
280381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 84 - 211
Target Start/End: Original strand, 265796 - 265924
Alignment:
| Q |
84 |
gtatgatttaggggatacatagagattgtaatttcagttaatgaagtggacattcatttatgtcatgttta-tgatttcttagatatgattgttgttctt |
182 |
Q |
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|||| |||| |||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||| ||||||||||||||| |
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| T |
265796 |
gtataatttggggggtacagagagattgtaatttcagttaatgaagtgaacattcatttatgtcatgtttagtgttttcttagacatgattgttgttctt |
265895 |
T |
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| Q |
183 |
gattaatcggtggtataatttacaagttt |
211 |
Q |
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| T |
265896 |
gattaatcggtggtataatttacaagttt |
265924 |
T |
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