View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13788_low_19 (Length: 227)
Name: NF13788_low_19
Description: NF13788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13788_low_19 |
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| [»] chr2 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4314751 - 4314977
Alignment:
| Q |
1 |
tagatgaagcaactctatattatttatatgacatgcacttctagtaattgcctccatgattgccattgtaaccttgaattcattgaaatgatcagaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
4314751 |
tagatgaagcaactctatattatttatatgacatgcacttctagtaattgcctccatgattgcctttgtaaccttgagttcattgaaatgatcagaaaca |
4314850 |
T |
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| Q |
101 |
catgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatgg |
200 |
Q |
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| T |
4314851 |
catgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatgg |
4314950 |
T |
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| Q |
201 |
cgatcacactcacacgagtcttatcat |
227 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4314951 |
ggatcacactcacacgagtcttatcat |
4314977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4305889 - 4306115
Alignment:
| Q |
1 |
tagatgaagcaactctatattatttatatgacatgcacttctagtaattgcctccatgattgccattgtaaccttgaattcattgaaatgatcagaaaca |
100 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| ||||||| |||||||||| |||||| || |||||| |
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| T |
4305889 |
tagatgaagcaactctatattatttatattacaagcacttctagtaactgcctccatgattgcctttgtaactttgaattcatcgaaatggtcggaaaca |
4305988 |
T |
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| Q |
101 |
catgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatgg |
200 |
Q |
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| T |
4305989 |
caagcccatgcttgcacatcaaaattttgctttatattgtcattgttgtacacaaattgggctaatatgatttttcccaccccacccatgccaactatgg |
4306088 |
T |
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| Q |
201 |
cgatcacactcacacgagtcttatcat |
227 |
Q |
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| T |
4306089 |
ggatcacagtcacacaagtcttatcat |
4306115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 4253669 - 4253528
Alignment:
| Q |
66 |
ttgtaaccttgaattcattgaaatgatcagaaacacatgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaa |
165 |
Q |
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||||||| || ||||||| ||||||||| || |||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||| |
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| T |
4253669 |
ttgtaacattaaattcatcgaaatgatccgaggcacaagcccatgcttgaacatcaaacttctgctttatactgtcatggttgtacacagattgggctaa |
4253570 |
T |
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| Q |
166 |
agtagtttttcccacaccacccatgccaactatggcgatcac |
207 |
Q |
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| T |
4253569 |
aattgtttttcccacaccacccataccaactatggggatcac |
4253528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 67 - 227
Target Start/End: Complemental strand, 4246550 - 4246391
Alignment:
| Q |
67 |
tgtaaccttgaattcattgaaatgatcagaaacacatgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaa |
166 |
Q |
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||||||||| || |||| |||| |||||| ||||| |||||||||||||||||||||| |||| |||| || |||| ||||| ||||||||||||||| |
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| T |
4246550 |
tgtaaccttcaagtcatcaaaatcatcagagacacaaacccatgcttgaacatcaaatttctgctgtatactg-catgattgtatacagattgggctaaa |
4246452 |
T |
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| Q |
167 |
gtagtttttcccacaccacccatgccaactatggcgatcacactcacacgagtcttatcat |
227 |
Q |
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| T |
4246451 |
gtgatttttcccacaccacccatgccaactatggggatcacagtcatacaagtcttatcat |
4246391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 41933178 - 41932952
Alignment:
| Q |
1 |
tagatgaagcaactctatattatttatatgacatgcacttctagtaattgcctccatgattgccattgtaaccttgaattcattgaaatgatcagaaaca |
100 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| ||||||||| |
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| T |
41933178 |
tagatgaagcaactctatattatttatattacaagcacttctagtaactgcctccatgattgcctttgtaaccttgaattcatcgaaatggtcagaaaca |
41933079 |
T |
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| Q |
101 |
catgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatgg |
200 |
Q |
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| T |
41933078 |
caagcccatgcttgaacatcaaacttttgctttatattgtcatggttgtacacagattgggctaaagtggtttttcccaccccacccatgccaactatgg |
41932979 |
T |
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| Q |
201 |
cgatcacactcacacgagtcttatcat |
227 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
41932978 |
ggatcacactcacacaagtcttatcat |
41932952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 34802876 - 34802996
Alignment:
| Q |
85 |
gaaatgatcagaaacacatgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacacca |
184 |
Q |
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||||||||||| |||||| |||||||||||||| | ||||| | ||||||| |||||||| |||||||||||||||||||||| |||||||| | ||| |
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| T |
34802876 |
gaaatgatcagtaacacaaacccatgcttgaacaccgaatttcttctttatactgtcatggatgtacacagattgggctaaagtggtttttcctattcca |
34802975 |
T |
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| Q |
185 |
cccatgccaactatggcgatc |
205 |
Q |
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||||||| |||||||| |||| |
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| T |
34802976 |
cccatgctaactatggggatc |
34802996 |
T |
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