View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13788_low_4 (Length: 465)
Name: NF13788_low_4
Description: NF13788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13788_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Complemental strand, 18840342 - 18839887
Alignment:
| Q |
19 |
cttgaagctcttgacatgggagctccgccacatggtatgtcttctaaaatggtttatagccccattcctccctttgtcgataaactgaattatcttatta |
118 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18840342 |
cttgaagctcttgatatgggggctccgccacatggtaagtcttctaaaatggtttatagccccattcctccctttgtcgataaactgaattatcttatta |
18840243 |
T |
|
| Q |
119 |
gagtagcatttgtctgtgcacaaccatattttcatttgaaatttaaccggtgtatcttcatttgaacac--------------agttgattttatcgatg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
18840242 |
gagtagcatttgtctgtgcacaaccatattttcatttgaaatataaccggtgtatcttcatttgaacactactataaaatcacagttgattttatcgatg |
18840143 |
T |
|
| Q |
205 |
attgttattatatat--caaatacaggaggcatagcttttggtttagacagattggttatgttgctagctggtgctaattcaaccagtgatgtcattgct |
302 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
18840142 |
attgttattatatatatcaaatacaggaggcatagcttttggtttggacagattggttatgttgctagctggtgctaattcaatcagggatgtcattgct |
18840043 |
T |
|
| Q |
303 |
ttcccaaaaacaacaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatcactacagagacattta |
402 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18840042 |
ttcccaaaaacaacaactgcacagtgtgccctcacgagatcgccttccaaggtggatccccaacagctgagagatctttcaatcactacacagacattta |
18839943 |
T |
|
| Q |
403 |
actcttgatagttttgttgcctatacccatttttgtactttgttaaagaataattta |
459 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
18839942 |
actcttgatagttttgttgcttata-ccatttttgtactttgttaaagaataattta |
18839887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 187 - 459
Target Start/End: Complemental strand, 18851238 - 18850962
Alignment:
| Q |
187 |
cagttgattttatcgatgattgttattatatatcaaatacaggaggcatagcttttggtttagacagattggttatgttgctagctggtgctaattcaac |
286 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
18851238 |
cagttgattttatcgataattgttattatatatcaaatgcaggaggcatagcttttggtctggacagattggttatgatgctagctggtgctaattcaat |
18851139 |
T |
|
| Q |
287 |
cagtgatgtcattgctttcccaaaaacaacaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatc |
386 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18851138 |
cagggatgtcattgctttcccaaaaacaacaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatc |
18851039 |
T |
|
| Q |
387 |
actacagaga----catttaactcttgatagttttgttgcctatacccatttttgtactttgttaaagaataattta |
459 |
Q |
| |
|
||| || ||| |||||||||||| |||||| | |||| |||||||||||||||||| || |||||||||||||| |
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|
| T |
18851038 |
actgcatagataggcatttaactcttcatagttatattgcttatacccatttttgtactctggtaaagaataattta |
18850962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 186 - 459
Target Start/End: Complemental strand, 50010917 - 50010639
Alignment:
| Q |
186 |
acagttgattttatcgatgattgttatt-atatatcaaatacaggaggcatagcttttggtttagacagattggttatgttgctagctggtgctaattca |
284 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||| |
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| T |
50010917 |
acagttgattttatcgatgattattatttatatatcaaatgcaggaggcatagcttttggtctggacagattggttatgttgctagctggggctaattca |
50010818 |
T |
|
| Q |
285 |
accagtgatgtcattgctttcccaaaaacaacaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaa |
384 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
50010817 |
atcagggatgtcattgctttcccaaaaacaacaactgcacagtgtgccctcacgagatcaccttctgaggtggatccccaacagctgaaagatctttcaa |
50010718 |
T |
|
| Q |
385 |
tcactacagaga----catttaactcttgatagttttgttgcctatacccatttttgtactttgttaaagaataattta |
459 |
Q |
| |
|
|||||||| ||| | |||||||||| |||||| |||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50010717 |
tcactacatagataggcgtttaactcttcatagttctgttgcttatacccatttttgtactctgttaaagaataattta |
50010639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 50011609 - 50011482
Alignment:
| Q |
19 |
cttgaagctcttgacatgggagctccgccacatggtatgtcttctaaaatggtttatagccccattcctccctttgtcgataaactgaattatcttatta |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
50011609 |
cttgaagctcttgacatgggggctccgccacatggtaagtcttctaaaatgatttatagccccattcctccc-ttgtcgataaactggattatcttatta |
50011511 |
T |
|
| Q |
119 |
gagtagcatttgtctgtgcacaaccatat |
147 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
50011510 |
gagtagcatttgtctgtgcacaaccatat |
50011482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 18851513 - 18851440
Alignment:
| Q |
19 |
cttgaagctcttgacatgggagctccgccacatggtatgtcttctaaaatggtttatagccccattcctccctt |
92 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
18851513 |
cttgaagctcttgacatgggggctccgccacatggtaaatcttctaaaatggtttatagccccattcctccctt |
18851440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 212 - 459
Target Start/End: Complemental strand, 44108167 - 44107916
Alignment:
| Q |
212 |
ttatatatcaaatacaggaggcatagcttttggtttagacagattggttatgttgctagctggtgctaattcaaccagtgatgtcattgctttcccaaaa |
311 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||| |
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|
| T |
44108167 |
ttatatatcaaatgcaggaggcatagcttttggtctggacagattggttatgttgctagctggggctaattcaatcagggatgtcattgctttcccaaaa |
44108068 |
T |
|
| Q |
312 |
acaacaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatcactacagaga----catttaactct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||| ||| | ||||||||| |
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|
| T |
44108067 |
acaacaactgcacagtgtgccctcacgagatcaccttctgaggtggaaccccaacagctgaaagatctttcaatcactacatagataggcgtttaactct |
44107968 |
T |
|
| Q |
408 |
tgatagttttgttgcctatacccatttttgtactttgttaaagaataattta |
459 |
Q |
| |
|
| |||||| |||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44107967 |
tcatagttctgttgcttatacccatttttgtactctgttaaagaataattta |
44107916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 44108657 - 44108530
Alignment:
| Q |
19 |
cttgaagctcttgacatgggagctccgccacatggtatgtcttctaaaatggtttatagccccattcctccctttgtcgataaactgaattatcttatta |
118 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
44108657 |
cttgaagctctcgacatgggggctccaccacatggtaagtcttctaaaatgatttatagccccattcctccc-ttgtcgataaactggattatcttatta |
44108559 |
T |
|
| Q |
119 |
gagtagcatttgtctgtgcacaaccatat |
147 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44108558 |
gagtagcatttgtctgtgcacaaccatat |
44108530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 187 - 454
Target Start/End: Complemental strand, 51295534 - 51295242
Alignment:
| Q |
187 |
cagttgattttatcgatgattgttattatatatcaaatacaggaggcatagcttttggtttagacagattggttatgttgctagctggtgctaattcaac |
286 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51295534 |
cagttgattttatccatgattgttattatatatcaaatgcaggaggcatagcttttggtctggacagattggttatgttgctagctggtgctaattcaat |
51295435 |
T |
|
| Q |
287 |
cagtgatgtcattgctttcccaaa---------------------aacaacaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaa |
365 |
Q |
| |
|
||| |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| | |
|
|
| T |
51295434 |
cagggatgtcattgctttcccaaaaacatcaactgctttcccaaaaacaagaactgcacagtgtgccctcaccagatcaccttccgaggtggatccccga |
51295335 |
T |
|
| Q |
366 |
cagctgagagatctttcaatcactacagaga----catttaactcttgatagttttgttgcctatacccatttttgtactttgttaaagaata |
454 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||||||||||| |||||| |||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
51295334 |
cagctgaaagatctttcaatcactacatagataggcatttaactcttaatagttatgttgcttatacccatttttgtactctgttaaagaata |
51295242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 51296424 - 51296303
Alignment:
| Q |
19 |
cttgaagctcttgacatgggagctccgccacatggtatgtcttctaaaatggtttatagccccattcctccctttgtcgataaactgaattatcttatta |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |
|
|
| T |
51296424 |
cttgaagctcttgacatgggggctccgccacatggtaattcttctaaaatggtttatagcccca--------cttgtcgatgaactgaattatctaatta |
51296333 |
T |
|
| Q |
119 |
gagtagcatttgtctgtgcacaaccatatt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
51296332 |
gagtagcatttgtctgtgcacaaccatatt |
51296303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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