View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13788_low_6 (Length: 458)
Name: NF13788_low_6
Description: NF13788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13788_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 6730495 - 6730162
Alignment:
| Q |
13 |
aatatccttcattgcaaccccaaagaaactatat-ccatatttcaattaacattcaaatcattttatttggtgtcttgtaaaatacaaagaagcaaggtt |
111 |
Q |
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| T |
6730495 |
aatatccttcattgcaaccc-aaagaaaagatattccatatctcaattaacattcaaatcattttatttggtgtcttgtaaaatacaaagaagcaaggtt |
6730397 |
T |
|
| Q |
112 |
gtcaaactcatatactcatacgagtttagctctttttaaaataatattaaaatcatttcttggtggtttgttattactttggttgatgggtcaaatactt |
211 |
Q |
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| T |
6730396 |
gtcaaactgata--------cgagtttagctctttttaaaataatattaaaatcatttcttggtggtttgttattactttggttggtgggtcaaatactt |
6730305 |
T |
|
| Q |
212 |
ctacttaatcccggtttgtgcataaagtgtcaattgtacaatgnnnnnnnctaattaaacttctcaaagtcacctttatattttatgcatataagctcag |
311 |
Q |
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| T |
6730304 |
ctacttaatcccggtttgtgcataaagtgtcgattgtacaatgaaaaaaactaattaaacttctcaaagtcacctttatattttatgcatataagctcag |
6730205 |
T |
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| Q |
312 |
ttttttaacaatgnnnnnnnntcaacaatgacatttctacttc |
354 |
Q |
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| T |
6730204 |
ttttttaacaatgaaaaaaaatcaacaatgacatttctacttc |
6730162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 350 - 458
Target Start/End: Complemental strand, 6730061 - 6729954
Alignment:
| Q |
350 |
acttcctaacatatctattttttaattaatctaatattgtcagtgttaaattttcgagcagnnnnnnnatgtacatactgccaaatgagagagaagaagg |
449 |
Q |
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| T |
6730061 |
acttcctaacatatctattttttaattaatctaatattgtcagtgttaaattttcaagcag-ttttttatgtgcatactgccaaatgagagagaagaagg |
6729963 |
T |
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| Q |
450 |
agtcaatga |
458 |
Q |
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| T |
6729962 |
agtcaatga |
6729954 |
T |
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