View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13788_low_8 (Length: 419)
Name: NF13788_low_8
Description: NF13788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13788_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 53592848 - 53592457
Alignment:
| Q |
1 |
ttatggtgatgagttgttagagaggttgagatgatatgttaaatgttggaacttatggtggttttataaagagaaagtaagaaattaagaatgagttttg |
100 |
Q |
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| T |
53592848 |
ttatggtaatgagttgttagagaggttgagatgatatgttaaatgttgaaacttatggtggttttataaagagaaa--------ttaagaatgagttttg |
53592757 |
T |
|
| Q |
101 |
aaattctcacgggccccttttattggtgcattcttctttgtaaagagaagcataggatc-ccaacccaactactcttgatatacttttgtttgttgtaac |
199 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |
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| T |
53592756 |
aaattctcacggcccccttttattggtgcattcttctttgtaaagagaagcataggatgtccaacctaactactcttgatgtacttttgtttgttgtaac |
53592657 |
T |
|
| Q |
200 |
ttgtaagtgatcaatccaatttttattgtttgcaggaaattggaaaaagtagatgacaagaagaaagatgtttgtttgatattatcttttagaaggaagc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |
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| T |
53592656 |
ttgtaagtgatcaatccaatttttattgtttgcaggaaattggaaaaagtagatgacaataagaaagatgtttgtttgattttatcttt--gaaggaagc |
53592559 |
T |
|
| Q |
300 |
atataggaaacacgcgatacaaccttacttgcattgctgttctcttcaagtagttgggtttgggacagataggtgaaatcgctatgttctctctcctgct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53592558 |
atataggaaacacgcgatacaaccttacttgcattgttgttctcttcaagtagttgggtttgggacagataggtgaaatcgctatgttctctctcctgct |
53592459 |
T |
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