View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13789_high_1 (Length: 1061)

Name: NF13789_high_1
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13789_high_1
NF13789_high_1
[»] chr6 (4 HSPs)
chr6 (336-934)||(12196422-12197017)
chr6 (12-203)||(12197052-12197243)
chr6 (948-1041)||(12196282-12196375)
chr6 (67-105)||(8317708-8317746)
[»] chr2 (6 HSPs)
chr2 (234-885)||(33683950-33684593)
chr2 (234-885)||(33701004-33701647)
chr2 (948-1025)||(33684718-33684795)
chr2 (948-1025)||(33701772-33701849)
chr2 (67-105)||(8053307-8053345)
chr2 (67-105)||(36672966-36673004)
[»] chr7 (5 HSPs)
chr7 (506-876)||(6372476-6372849)
chr7 (19-302)||(6372851-6373123)
chr7 (520-873)||(10332540-10332894)
chr7 (67-105)||(7942287-7942325)
chr7 (184-261)||(27759426-27759503)
[»] chr3 (6 HSPs)
chr3 (24-586)||(14639082-14639644)
chr3 (659-874)||(14639669-14639886)
chr3 (948-1029)||(14640022-14640103)
chr3 (948-1029)||(39735149-39735230)
chr3 (67-105)||(43552207-43552245)
chr3 (67-105)||(54169548-54169586)
[»] scaffold0044 (1 HSPs)
scaffold0044 (67-105)||(47069-47107)
[»] chr8 (3 HSPs)
chr8 (67-105)||(199888-199926)
chr8 (67-105)||(314725-314763)
chr8 (67-105)||(30408007-30408045)
[»] chr5 (4 HSPs)
chr5 (67-105)||(7101578-7101616)
chr5 (67-105)||(12021204-12021242)
chr5 (67-105)||(16796584-16796622)
chr5 (67-105)||(37679951-37679989)
[»] chr4 (2 HSPs)
chr4 (969-1007)||(9667042-9667080)
chr4 (67-105)||(44149473-44149511)
[»] chr1 (1 HSPs)
chr1 (67-105)||(26313928-26313966)


Alignment Details
Target: chr6 (Bit Score: 495; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 336 - 934
Target Start/End: Complemental strand, 12197017 - 12196422
Alignment:
Q  336 agatgaatattgggattgtactgcaaacaagtgcagtgtctctgagaagcaggttatcattgaagataatagagaatctgatgagctcaccataaatgaa 435  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12197017 agatgaatattgggattgtactgcaaataagtgcagtgtctctgagaaggaggttatcattgaagataatagagaatctgatgagctcaccataaatgaa 12196918  T
Q  436 gttgctaatgaagaagaaatcttagatgaagagtcaaccactatagccagaccacaaagaaacagacaaattccaagaagtttagaagactgtcaggtaa 535  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12196917 gttgctaatgatgaagaaatcatagatgaagagtcaaccactatagccagaccacaaagaaacagacaaattccaagaagttcagaagactgtcaggtaa 12196818  T
Q  536 ctggtgatgaagaagtaggtagtgatggtgaattggtgcattttacaatgcgagcagacatcgagccattagattacatagctgcactatgtgataaggc 635  Q
    |||||||||| |||     |||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12196817 ctggtgatgatgaa----ctagtgatggttaattggtgcattttgcaatgctagcagacatcgagccattagattacatagctgcactatgtgataaggc 12196722  T
Q  636 attgaaggaagctatgatagatgaactaaaatctattgagaagagtcagacttgtgaactgattaagcttcgagatggaaagaaggcaatagatataaaa 735  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  12196721 attaaaggaagctatgataggtgaactaaaatctattgagaagagtcagacttgtgaactgataaagcttcgagatggaaaaaaggcaatagatataaaa 12196622  T
Q  736 ttggttttcaagttaaaatttaatcaagaagggaagattgtgaagcacaaagcaaggcttttggctagaggtttatttagaaggaaagttttgattacac 835  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12196621 ttggttttcaagttaaaatttaatcaagaagggaagattgtgaatcacgaagcaaggcttttggctagaggtttatttagaaggaaggttttgattacac 12196522  T
Q  836 taaagttttctca-cagttgcaagacatgaaactatcagattggttatagcgttagcaactagtaaagtttgcatttctgaatggtacattagaagagac 934  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12196521 taaagttttctcaccagatgcaagacatgaaactatcagattggttatagtattagcaactagtaaagtttgcatttctgaatggtacattagaagagac 12196422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 12197243 - 12197052
Alignment:
Q  12 gattatactgatagagaagaagcttcctcttgaattttggggtaaagtagggaatactgcagcttacatcttaaatagatgtcccactaagaaattgaag 111  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12197243 gattatgctgatagagaagaagctacctcatgaattttggggtaaagtagggaatattgcagcttacatcttaaatagatgtcccactaagaaattgaag 12197144  T
Q  112 aatcaagtgtctgaagaggtttggtcaggtagaaaaccatatgtcagtcatttgaaggtgtttagctcaatatgctataaacatatccctga 203  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||    
T  12197143 aatcaagtgcctgaagaggtttggtcaggtagaaaaccatatgtcagtcatttgaaggtatttggctcaatatgctataagcatatccctga 12197052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 948 - 1041
Target Start/End: Complemental strand, 12196375 - 12196282
Alignment:
Q  948 gatagagtgttcagattgagcaaagccttatatggtttgaaacaagcaactagagcctggaataaaagaattgacaaattctgcaatgatgaat 1041  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||    
T  12196375 gatagagtgttcagattgagcaaagccttatatggtttgaaacaagcacctagagcctgaaataaaagaattgataaattctgcaatgatgaat 12196282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 8317746 - 8317708
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  8317746 actgcagcatacatcttaaacagatgtcccactaagaaa 8317708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 195; Significance: 1e-105; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 234 - 885
Target Start/End: Original strand, 33683950 - 33684593
Alignment:
Q  234 tgaagctatgatcttagttggttatcataatactagagcatatagattgcttgatccacaatctaagaaaattgctatcagtaggtatgtgaaagtctta 333  Q
    |||| |||||||||||||||| ||||| |||||| |||||||||||||| ||||| |||| |||||||||||||| || |||||  ||||||| || |||    
T  33683950 tgaatctatgatcttagttggatatcacaatactggagcatatagattgtttgattcacactctaagaaaattgcaattagtagagatgtgaatgtttta 33684049  T
Q  334 gaagatgaatattgggattgtactgcaaacaagtgcagtgtctctgagaagcaggttatcattgaagataatagagaatctgatgagctcaccataaatg 433  Q
    || || |||||||||||||| | | ||||  | |||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||    
T  33684050 gaggaagaatattgggattggaattcaaatgaatgcagtgtgtctgagaagcaagttatcattgaagataataaagaaactgatgagcttaccatcaatg 33684149  T
Q  434 aagttgctaatgaagaagaaatcttagatgaagagtcaaccactatagccagaccacaaagaaacagacaaattccaagaagtttagaagactgtcaggt 533  Q
    |||  |||| | ||||| |||| |||||||| ||| |||||||||||||||||||| ||||||||| |||||| ||||  || ||  | || ||||| ||    
T  33684150 aagaagctattaaagaataaatattagatgaggagccaaccactatagccagaccataaagaaacaaacaaatcccaatgagattgcaggattgtcaagt 33684249  T
Q  534 aactggtgatgaagaagtaggtagtgatggtgaattggtgcattttacaatgcgagcagacatcgagccattagattacatagctgcactatgtgataag 633  Q
    | |||||||||| |||||||||  | ||||||||||||||||||||  |||||  ||||||   |||||||||||||||| ||||||||||||||||||     
T  33684250 atctggtgatgatgaagtaggttctaatggtgaattggtgcattttgaaatgcttgcagactctgagccattagattacaaagctgcactatgtgataat 33684349  T
Q  634 gcattgaaggaagctatgatagatgaactaaaatctattgagaagagtcagacttgtgaactgattaagcttcgagatggaaagaaggcaatagatataa 733  Q
      || |||||||||||||||||||||  | || ||||||||||||| ||||||    ||||||||| | || |  ||||| ||||| || | |||| | |    
T  33684350 aaatggaaggaagctatgatagatgagttgaattctattgagaagaatcagacacaagaactgattcaactccctgatggtaagaaagctacagatgtca 33684449  T
Q  734 aattggttttcaagttaaaatttaatcaagaagggaagattgtgaagcacaaagcaaggcttttggctagagg-tttatttagaaggaaagttttgatta 832  Q
    |||  |||||||| || ||||| ||||  ||||||||          |||||||||||  |  |||||||||| ||| |  |||| ||| ||||||||||    
T  33684450 aataagttttcaaattgaaattgaatcctgaagggaa----------cacaaagcaagattagtggctagaggttttctacagaaagaaggttttgatta 33684539  T
Q  833 cactaaagttttctca-cagttgcaagacatgaaactatcagattggttatagc 885  Q
    |||| ||||||||||| |||||||||| |||||||||||||||||| |||||||    
T  33684540 cactgaagttttctcaccagttgcaaggcatgaaactatcagattgattatagc 33684593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 234 - 885
Target Start/End: Original strand, 33701004 - 33701647
Alignment:
Q  234 tgaagctatgatcttagttggttatcataatactagagcatatagattgcttgatccacaatctaagaaaattgctatcagtaggtatgtgaaagtctta 333  Q
    |||| |||||||||||||||| ||||| |||||| |||||||||||||| ||||| |||| |||||||||||||| || |||||  ||||||| || |||    
T  33701004 tgaatctatgatcttagttggatatcacaatactggagcatatagattgtttgattcacactctaagaaaattgcaattagtagagatgtgaatgtttta 33701103  T
Q  334 gaagatgaatattgggattgtactgcaaacaagtgcagtgtctctgagaagcaggttatcattgaagataatagagaatctgatgagctcaccataaatg 433  Q
    || || |||||||||||||| | | ||||  | |||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||    
T  33701104 gaggaagaatattgggattggaattcaaatgaatgcagtgtgtctgagaagcaagttatcattgaagataataaagaaactgatgagcttaccatcaatg 33701203  T
Q  434 aagttgctaatgaagaagaaatcttagatgaagagtcaaccactatagccagaccacaaagaaacagacaaattccaagaagtttagaagactgtcaggt 533  Q
    |||  |||| | ||||| |||| |||||||| ||| |||||||||||||||||||| ||||||||| |||||| ||||  || ||  | || ||||| ||    
T  33701204 aagaagctattaaagaataaatattagatgaggagccaaccactatagccagaccataaagaaacaaacaaatcccaatgagattgcaggattgtcaagt 33701303  T
Q  534 aactggtgatgaagaagtaggtagtgatggtgaattggtgcattttacaatgcgagcagacatcgagccattagattacatagctgcactatgtgataag 633  Q
    | |||||||||| |||||||||  | ||||||||||||||||||||  |||||  ||||||   |||||||||||||||| ||||||||||||||||||     
T  33701304 atctggtgatgatgaagtaggttctaatggtgaattggtgcattttgaaatgcttgcagactctgagccattagattacaaagctgcactatgtgataat 33701403  T
Q  634 gcattgaaggaagctatgatagatgaactaaaatctattgagaagagtcagacttgtgaactgattaagcttcgagatggaaagaaggcaatagatataa 733  Q
      || |||||||||||||||||||||  | || ||||||||||||| ||||||    ||||||||| | || |  ||||| ||||| || | |||| | |    
T  33701404 aaatggaaggaagctatgatagatgagttgaattctattgagaagaatcagacacaagaactgattcaactccctgatggtaagaaagctacagatgtca 33701503  T
Q  734 aattggttttcaagttaaaatttaatcaagaagggaagattgtgaagcacaaagcaaggcttttggctagagg-tttatttagaaggaaagttttgatta 832  Q
    |||  |||||||| || ||||| ||||  ||||||||          |||||||||||  |  |||||||||| ||| |  |||| ||| ||||||||||    
T  33701504 aataagttttcaaattgaaattgaatcctgaagggaa----------cacaaagcaagattagtggctagaggttttctacagaaagaaggttttgatta 33701593  T
Q  833 cactaaagttttctca-cagttgcaagacatgaaactatcagattggttatagc 885  Q
    |||| ||||||||||| |||||||||| |||||||||||||||||| |||||||    
T  33701594 cactgaagttttctcaccagttgcaaggcatgaaactatcagattgattatagc 33701647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 948 - 1025
Target Start/End: Original strand, 33684718 - 33684795
Alignment:
Q  948 gatagagtgttcagattgagcaaagccttatatggtttgaaacaagcaactagagcctggaataaaagaattgacaaa 1025  Q
    ||||||||||||||| ||| |||| | || ||||| || ||||||||| | |||||||| ||||||||||||||||||    
T  33684718 gatagagtgttcagactgaacaaaactttgtatggcttaaaacaagcaccaagagcctgaaataaaagaattgacaaa 33684795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 948 - 1025
Target Start/End: Original strand, 33701772 - 33701849
Alignment:
Q  948 gatagagtgttcagattgagcaaagccttatatggtttgaaacaagcaactagagcctggaataaaagaattgacaaa 1025  Q
    ||||||||||||||| ||| |||| | || ||||| || ||||||||| | |||||||| ||||||||||||||||||    
T  33701772 gatagagtgttcagactgaacaaaactttgtatggcttaaaacaagcaccaagagcctgaaataaaagaattgacaaa 33701849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 8053307 - 8053345
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  8053307 actgcagcatacatcttaaacagatgtcccactaagaaa 8053345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 36672966 - 36673004
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  36672966 actgcagcatacatcttaaacagatgtcccactaagaaa 36673004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 4e-81; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 506 - 876
Target Start/End: Complemental strand, 6372849 - 6372476
Alignment:
Q  506 ttccaagaagtttagaagactgtcaggtaactggtgatgaagaagtaggtagtgatggtgaattggtgcattttacaatgcgagcagacatcgagccatt 605  Q
    ||||||| || || ||||| ||| |||||||| ||||||| |||||||| |||||||||||||||||||||||  |||||| ||||||||  ||||||||    
T  6372849 ttccaaggagattggaagattgttaggtaactagtgatgatgaagtaggcagtgatggtgaattggtgcatttcgcaatgctagcagacactgagccatt 6372750  T
Q  606 agattacatagctgcactatgtgataaggcattgaaggaagctatgatagatgaactaaaatctattgagaagagtcagacttgtgaactgattaagctt 705  Q
    |||||| | |||||||||||||||||||  || |||||||||||| |||||||||||||||||||||||||||| | ||||||| |||| | || |||||    
T  6372749 agattataaagctgcactatgtgataagaaatggaaggaagctataatagatgaactaaaatctattgagaagaataagacttgggaaccgtttcagctt 6372650  T
Q  706 cgagatggaaagaaggcaatagatataaaattggttttcaagttaaaatttaatcaagaagggaagattgtgaagcacaaagcaaggcttttggctagag 805  Q
    | |||| ||||||| ||||||||| | |||| ||| |||||||| ||||| || |  || |||||||||||||| || |||||||| ||| |||||||||    
T  6372649 ctagattgaaagaaagcaatagatgtcaaatgggtcttcaagtttaaattgaaccctgacgggaagattgtgaatcaaaaagcaagacttgtggctagag 6372550  T
Q  806 gtttatt-tagaaggaaagttttgattacactaaagttttctca-cagttgc-aagacatgaaactatcagatt 876  Q
    |||| || ||||| ||| | |||||||||||| ||||||||||| || |||| || ||||||||||||||||||    
T  6372549 gtttcttatagaatgaaggctttgattacactgaagttttctcaccaattgcaaaaacatgaaactatcagatt 6372476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 6373123 - 6372851
Alignment:
Q  19 ctgatagagaagaagcttcctcttgaattttggggtaaagtagggaatactgcagcttacatcttaaatagatgtcccactaagaaattgaagaatcaag 118  Q
    |||| |||||| ||||| |||| |||||| |||||| ||| || |||||||| |||||| ||||||||||           |||||||||||||||||||    
T  6373123 ctgaaagagaaaaagctacctcatgaattctggggtgaagcagtgaatactgtagcttatatcttaaata-----------aagaaattgaagaatcaag 6373035  T
Q  119 tgtctgaagaggtttggtcaggtagaaaaccatatgtcagtcatttgaaggtgtttagctcaatatgctataaacatatccctgatgcaagaagaaagaa 218  Q
    |  |||||||||||||||| |||||||||||||   |||||||||||||| ||||| |||||||| ||||||| ||| |||||||| |||||||||||||    
T  6373034 ttcctgaagaggtttggtcgggtagaaaaccatcaatcagtcatttgaagatgtttggctcaataagctataagcatgtccctgatacaagaagaaagaa 6372935  T
Q  219 gttggaggacaagaatgaagctatgatcttagttggttatcataatactagagcatatagattgcttgatccacaatctaagaa 302  Q
    |||||||||||||| ||||| ||||||||||||||||||||| |||| | |||||||||  |||||||||||| ||||||||||    
T  6372934 gttggaggacaagagtgaagttatgatcttagttggttatcacaatattggagcatatatgttgcttgatccataatctaagaa 6372851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 520 - 873
Target Start/End: Original strand, 10332540 - 10332894
Alignment:
Q  520 gaagactgtcaggtaactggtgatgaagaagtaggtagtgatggtgaattggtgcattttacaatgcgagcagacatcgagccattagattacatagctg 619  Q
    ||||||| |||| |||||  |||||| |||||||| |||||||||||  |||| || ||| |||||  ||||||  | |||| | ||||||| | || ||    
T  10332540 gaagactatcagctaactcctgatgatgaagtaggaagtgatggtgagctggtacactttgcaatgttagcagattttgagcaagtagattagaaagttg 10332639  T
Q  620 cactatgtgataaggcattgaaggaagctatgatagatgaactaaaatctattgagaagagtcagacttgtgaactgattaagcttcgagatggaaagaa 719  Q
    || | |||||||| |||| |||  ||| |||||||||||||||||  ||||||||||||| ||| || || ||||| || |||||||  | |||||||||    
T  10332640 caatgtgtgataaagcatggaaataagatatgatagatgaactaatgtctattgagaagaatcaaacatg-gaactaatcaagcttcctggtggaaagaa 10332738  T
Q  720 ggcaatagatataaaattggttttcaagttaaaatttaatcaagaagggaagattgtgaagcacaaagcaaggcttttggctagaggtttatt-tagaag 818  Q
     ||||| ||| | |||| |||||| ||| | ||||| || |  |||||||||||||||||||||||||| |||||| | |||| ||  || || | ||||    
T  10332739 agcaattgatttcaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagccaggcttgtagctaaagaattcttatggaag 10332838  T
Q  819 gaaagttttgattacactaaagttttctca-cagttgcaagacatgaaactatcag 873  Q
    ||| | ||| | || ||||||||||||||| |||||||| |||||||||| |||||    
T  10332839 gaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcag 10332894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 7942325 - 7942287
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  7942325 actgcagcatacatcttaaacagatgtcccactaagaaa 7942287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 27759426 - 27759503
Alignment:
Q  184 tgctataaacatatccctgatgcaagaagaaagaagttggaggacaagaatgaagctatgatcttagttggttatcat 261  Q
    |||||||  ||||||||||||||||  |||| |||||||| ||| |||| |||| ||||||| || ||||| ||||||    
T  27759426 tgctatatgcatatccctgatgcaaagagaaggaagttgggggataagagtgaacctatgatattggttggctatcat 27759503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 9e-39; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 24 - 586
Target Start/End: Original strand, 14639082 - 14639644
Alignment:
Q  24 agagaagaagcttcctcttgaattttggggtaaagtagggaatactgcagcttacatcttaaatagatgtcccactaagaaattgaagaatcaagtgtct 123  Q
    |||||| ||| | |||| |||||||||||||  || ||  || |||||| |||| ||  ||||||||||||| ||||||||  ||||| || | ||| ||    
T  14639082 agagaaaaagatacctcatgaattttggggtgcagcagtcaacactgcaacttatattctaaatagatgtcctactaagaagatgaaggataaggtgcct 14639181  T
Q  124 gaagaggtttggtcaggtagaaaaccatatgtcagtcatttgaaggtgtttagctcaatatgctataaacatatccctgatgcaagaagaaagaagttgg 223  Q
    |||||| |||||||| | || ||||| |   ||| | ||||||| || ||| | ||||| | |||||| ||| | |||||| |||||||||||||| | |    
T  14639182 gaagagatttggtcaagaaggaaaccttcaatcattaatttgaaagtttttggttcaatcttctataagcatgttcctgattcaagaagaaagaagctag 14639281  T
Q  224 aggacaagaatgaagctatgatcttagttggttatcataatactagagcatatagattgcttgatccacaatctaagaaaattgctatcagtaggtatgt 323  Q
    ||||||| | |||||||||||| || ||||| ||||| || ||| |||| |||||||||||||||| ||| |||||||| ||| | || | |||  ||||    
T  14639282 aggacaaaattgaagctatgattttggttggctatcacaacactggagcttatagattgcttgatctacactctaagaagatttcaataattagagatgt 14639381  T
Q  324 gaaagtcttagaagatgaatattgggattgtactgcaaacaagtgcagtgtctctgagaagcaggttatcattgaagataatagagaatctgatgagctc 423  Q
    |||||| ||||| || ||||| |||||||| | | ||||  | |||||||| | ||| ||  | |||||||||||| |||| |  || |||||||||||     
T  14639382 gaaagtgttagaggaagaatactgggattggaattcaaatgaatgcagtgtgtatgaaaaaaatgttatcattgaaaataagaaggagtctgatgagctt 14639481  T
Q  424 accataaatgaagttgctaatgaagaagaaatcttagatgaagagtcaaccactatagccagaccacaaagaaacagacaaattccaagaagtttagaag 523  Q
      || ||||||||  | || |   |||||  | | | |||| ||| |||| ||||||||||||||||||||||||| |||||| | ||| || ||  | |    
T  14639482 ctcacaaatgaagaagttatttctgaagaggtatcatatgaggagccaacaactatagccagaccacaaagaaacaaacaaatgctaaggagattgcagg 14639581  T
Q  524 actgtcaggtaactggtgatgaagaagtaggtagtgatggtgaattggtgcattttacaatgc 586  Q
    | ||||| |||||| ||||||| ||  |||||  ||||||||| || ||||||||| ||||||    
T  14639582 attgtcaagtaacttgtgatgatgagataggttctgatggtgagttagtgcattttgcaatgc 14639644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 659 - 874
Target Start/End: Original strand, 14639669 - 14639886
Alignment:
Q  659 aactaaaatctattgagaagagtcagacttgtgaactgattaagcttcgagatggaaagaaggcaatagatataaaattggttttcaagttaaaatttaa 758  Q
    |||||||||||| || ||||| |||||| || ||| ||||||| ||    ||||| ||||| ||||||||| | |||| ||| || ||||| ||||| ||    
T  14639669 aactaaaatctagtgggaagaatcagacatgggaattgattaaactatctgatggtaagaaagcaatagatgttaaatgggtctttaagttgaaattgaa 14639768  T
Q  759 tcaagaagggaagattgtgaagcacaaagcaaggcttttggctagaggtttatt-tagaaggaaagttttgattacactaaagttttctca-cagttgca 856  Q
    ||  |||||||||||||||||||||||||| || ||| ||||||||| ||| ||  |||||||| | |||||||| ||| |||| |||||| ||||| ||    
T  14639769 tcctgaagggaagattgtgaagcacaaagctagacttgtggctagagttttcttgaagaaggaaggctttgattatactgaagtgttctcaccagttcca 14639868  T
Q  857 agacatgaaactatcaga 874  Q
    ||||||||||| ||||||    
T  14639869 agacatgaaaccatcaga 14639886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 948 - 1029
Target Start/End: Original strand, 14640022 - 14640103
Alignment:
Q  948 gatagagtgttcagattgagcaaagccttatatggtttgaaacaagcaactagagcctggaataaaagaattgacaaattct 1029  Q
    |||||||| |||| ||| |  ||||| || ||||| |||||||||||| ||||||| ||||||||||||||||| |||||||    
T  14640022 gatagagttttcaaattaaataaagctttgtatggattgaaacaagcacctagagcgtggaataaaagaattgaaaaattct 14640103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 948 - 1029
Target Start/End: Original strand, 39735149 - 39735230
Alignment:
Q  948 gatagagtgttcagattgagcaaagccttatatggtttgaaacaagcaactagagcctggaataaaagaattgacaaattct 1029  Q
    |||||||| || | ||||| |||||| || ||||  |||||||||||| |||||||||||||||||| ||| |||| |||||    
T  39735149 gatagagtatttaaattgaacaaagctttgtatgacttgaaacaagcacctagagcctggaataaaaaaatcgacatattct 39735230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 43552207 - 43552245
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  43552207 actgcagcatacatcttaaacagatgtcccactaagaaa 43552245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 54169586 - 54169548
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  54169586 actgcagcatacatcttaaacagatgtcccactaagaaa 54169548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 47107 - 47069
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  47107 actgcagcatacatcttaaacagatgtcccactaagaaa 47069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 199926 - 199888
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  199926 actgcagcatacatcttaaacagatgtcccactaagaaa 199888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 314763 - 314725
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  314763 actgcagcatacatcttaaacagatgtcccactaagaaa 314725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 30408045 - 30408007
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  30408045 actgcagcatacatcttaaacagatgtcccactaagaaa 30408007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 7101616 - 7101578
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  7101616 actgcagcatacatcttaaacagatgtcccactaagaaa 7101578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 12021204 - 12021242
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  12021204 actgcagcatacatcttaaacagatgtcccactaagaaa 12021242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 16796584 - 16796622
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  16796584 actgcagcatacatcttaaacagatgtcccactaagaaa 16796622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 37679951 - 37679989
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  37679951 actgcagcatacatcttaaacagatgtcccactaagaaa 37679989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 969 - 1007
Target Start/End: Original strand, 9667042 - 9667080
Alignment:
Q  969 aaagccttatatggtttgaaacaagcaactagagcctgg 1007  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  9667042 aaagccttatatggtttgaaacaagctcctagagcctgg 9667080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 44149473 - 44149511
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  44149473 actgcagcatacatcttaaacagatgtcccactaagaaa 44149511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 26313928 - 26313966
Alignment:
Q  67 actgcagcttacatcttaaatagatgtcccactaagaaa 105  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  26313928 actgcagcatacatcttaaacagatgtcccactaagaaa 26313966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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