View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_high_16 (Length: 449)
Name: NF13789_high_16
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 8005412 - 8004997
Alignment:
| Q |
16 |
ataagggaggcttatatatttttgtaaaatagagggggtatttgtgacataagagcatacctcaagggaggttaattattgtatttttccctatatttta |
115 |
Q |
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| T |
8005412 |
ataagggaggcttatgtatttttgtaaaatagagggggtatttgtgacataagagcatacctcaagggaggtta----ttgtatttttccctatatttta |
8005317 |
T |
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| Q |
116 |
tgcgacagagaatatttattaagatacctaaagtgacttggaggaagtaaatgagaggagacacatagttaactagtgattgaggcatattaaaagatga |
215 |
Q |
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| T |
8005316 |
tgcgacagagaatatttattaagatacctaaagtgacttggaggaattaaatgagaggagacacatagttaaccagtaattgacgcatattaaaagatga |
8005217 |
T |
|
| Q |
216 |
agtagttaagactaaggtcatg--ctaacaagcacttgacatttcttttggaacaaaataaagaaattttgtattnnnnnnncctttttaaaactcttaa |
313 |
Q |
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| T |
8005216 |
agtagttaagactaaggtcatgtactaacaagcacttgacatttctttaggaacaaaataaagaaattttgtattaaaaaaacctttttataattcctaa |
8005117 |
T |
|
| Q |
314 |
agagttgactacacaattgccaatacattattactatatttgattctttaacctcgtaaggtatggattcatacatttcatcatttcataatcaatcggt |
413 |
Q |
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| T |
8005116 |
agagttgactacacaattgccaatacattattactatatttaattctttaacgtcgtaaggtatggattcatacatttcatcatttcataatcaatcagt |
8005017 |
T |
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| Q |
414 |
ttatatcacaacttcatcga |
433 |
Q |
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| T |
8005016 |
ttatatcacaacttcatcga |
8004997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 15118302 - 15118355
Alignment:
| Q |
312 |
aaagagttgactacacaattgccaatacattattactatatttgattctttaac |
365 |
Q |
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| T |
15118302 |
aaagagttgacgacacaaccttcaatacattattactatatttgattccttaac |
15118355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 33733137 - 33733209
Alignment:
| Q |
34 |
tttttgtaaaatagagggggtatttgtgacataagagcatacctcaagggaggttaattattgtatttttccctata |
110 |
Q |
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| T |
33733137 |
tttttgtaaaatagaggaggtatttgtgacgtaagagcatacctcaagcaagg----ttattgtatttttccctata |
33733209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 9748245 - 9748315
Alignment:
| Q |
34 |
tttttgtaaaatagagggggtatttgtgacataagagcatacctcaagggaggttaattattgtatttttcccta |
108 |
Q |
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| T |
9748245 |
tttttgtaaaatagagggggtgtcattgacattagaacatacctcaggggagg----ttattgtatttttcccta |
9748315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 48768344 - 48768287
Alignment:
| Q |
310 |
ttaaagagttgactacacaattgccaatacattat-tactatatttgattctttaacc |
366 |
Q |
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| T |
48768344 |
ttaaagagttgacaacacaagttccaatataatatctactatatttgattctttaacc |
48768287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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