View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_high_23 (Length: 373)
Name: NF13789_high_23
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 5 - 358
Target Start/End: Original strand, 27998412 - 27998765
Alignment:
| Q |
5 |
gagagatgaaattatggatggcaaaaagtatgagtatggacctgtgttaagagttttaatcatttgtagtgcatgatcatgtatacaacaaagataaagt |
104 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27998412 |
gagatatgaaattatggatggcaaaaagtatgagtatggacctgtgttaagagttttaatcatttgtagtgcatgatcatgtatagaacaaagataaagt |
27998511 |
T |
|
| Q |
105 |
aagcaatccttcatccttgtcaatttttctcatgcttaaaaatatagtttcaagatttcattacaattttatagttctagcttaacctacatgcttaaaa |
204 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27998512 |
aagcaatccttcatccttgtcaatttttctcatccttaaaaatatagtttcaagatttcattacaattttatagttctagcttaacctacatgcttaaaa |
27998611 |
T |
|
| Q |
205 |
ttaatttggagtggattttatagatgattatgttatgatcacattttgcactaatataagtaaattgaatggttagcatcaacacagttctttccaccct |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27998612 |
ttaatttggagtggattttatagatgattatgttatgatcacattttgcactaatataagtaaattgaatggttagcatcaacacagttctttccaccct |
27998711 |
T |
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| Q |
305 |
ttaactaaattgagcaagaatgttaaaaaatcattgctctttataggtttgact |
358 |
Q |
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| T |
27998712 |
ttaactaaattgagcaagaatgttgaaaaatcattgctctttataggtttgact |
27998765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 4532436 - 4532392
Alignment:
| Q |
314 |
ttgagcaagaatgttaaaaaatcattgctctttataggtttgact |
358 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4532436 |
ttgagcaagaatgttgaaaaatcattgctctttataggtttgact |
4532392 |
T |
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