View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13789_high_3 (Length: 672)

Name: NF13789_high_3
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13789_high_3
NF13789_high_3
[»] chr2 (3 HSPs)
chr2 (607-647)||(18179064-18179104)
chr2 (264-299)||(24011886-24011921)
chr2 (607-640)||(43529773-43529806)
[»] chr1 (6 HSPs)
chr1 (235-300)||(46937604-46937671)
chr1 (606-640)||(19462681-19462715)
chr1 (618-647)||(10199334-10199363)
chr1 (618-647)||(50644181-50644210)
chr1 (606-646)||(26866429-26866469)
chr1 (601-637)||(40751031-40751067)
[»] chr8 (1 HSPs)
chr8 (235-299)||(18899949-18900015)
[»] chr7 (6 HSPs)
chr7 (608-647)||(34036032-34036071)
chr7 (618-655)||(8427120-8427157)
chr7 (610-647)||(19302481-19302518)
chr7 (606-647)||(24975991-24976032)
chr7 (261-297)||(38921333-38921369)
chr7 (607-647)||(43854956-43854996)
[»] chr5 (2 HSPs)
chr5 (256-319)||(9634880-9634943)
chr5 (606-642)||(14331486-14331522)
[»] chr4 (5 HSPs)
chr4 (606-647)||(27043744-27043785)
chr4 (610-643)||(39691067-39691100)
chr4 (606-642)||(679411-679447)
chr4 (606-642)||(1133048-1133084)
chr4 (611-647)||(4449024-4449060)
[»] chr3 (1 HSPs)
chr3 (618-655)||(31403466-31403503)
[»] chr6 (1 HSPs)
chr6 (618-658)||(32205939-32205979)


Alignment Details
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 607 - 647
Target Start/End: Complemental strand, 18179104 - 18179064
Alignment:
Q  607 ggtctgttcgaattgacttatttgagcttatctactaacat 647  Q
    |||||||| | ||||||||||||||||||||||||||||||    
T  18179104 ggtctgtttggattgacttatttgagcttatctactaacat 18179064  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 299
Target Start/End: Complemental strand, 24011921 - 24011886
Alignment:
Q  264 gctataatattgttgtgtagcggaatttgaacaaac 299  Q
    ||||||| ||||||||||||||||||||||||||||    
T  24011921 gctataacattgttgtgtagcggaatttgaacaaac 24011886  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 607 - 640
Target Start/End: Original strand, 43529773 - 43529806
Alignment:
Q  607 ggtctgttcgaattgacttatttgagcttatcta 640  Q
    |||||||| |||||||||||||||||||||||||    
T  43529773 ggtctgtttgaattgacttatttgagcttatcta 43529806  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 46937604 - 46937671
Alignment:
Q  235 tatttagtacaaaatgttgt--aatagaggcgctataatattgttgtgtagcggaatttgaacaaacc 300  Q
    ||||||||||||||| ||||  ||||| |||||||||| | |||||  ||||||||||||||||||||    
T  46937604 tatttagtacaaaatattgtgaaatagtggcgctataacactgttgcatagcggaatttgaacaaacc 46937671  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 606 - 640
Target Start/End: Original strand, 19462681 - 19462715
Alignment:
Q  606 gggtctgttcgaattgacttatttgagcttatcta 640  Q
    |||||||||||||||||||||||| ||||||||||    
T  19462681 gggtctgttcgaattgacttatttaagcttatcta 19462715  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 618 - 647
Target Start/End: Original strand, 10199334 - 10199363
Alignment:
Q  618 attgacttatttgagcttatctactaacat 647  Q
    ||||||||||||||||||||||||||||||    
T  10199334 attgacttatttgagcttatctactaacat 10199363  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 618 - 647
Target Start/End: Original strand, 50644181 - 50644210
Alignment:
Q  618 attgacttatttgagcttatctactaacat 647  Q
    ||||||||||||||||||||||||||||||    
T  50644181 attgacttatttgagcttatctactaacat 50644210  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 606 - 646
Target Start/End: Complemental strand, 26866469 - 26866429
Alignment:
Q  606 gggtctgttcgaattgacttatttgagcttatctactaaca 646  Q
    ||||||||| | |||||||||||| ||||||||||||||||    
T  26866469 gggtctgtttggattgacttatttcagcttatctactaaca 26866429  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 601 - 637
Target Start/End: Original strand, 40751031 - 40751067
Alignment:
Q  601 atttcgggtctgttcgaattgacttatttgagcttat 637  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  40751031 atttagggtctgtttgaattgacttatttgagcttat 40751067  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 18900015 - 18899949
Alignment:
Q  235 tatttagtacaaaatgttgt--aatagaggcgctataatattgttgtgtagcggaatttgaacaaac 299  Q
    |||||| |||||||||||||  |||||||||  ||||  | ||||||||||||||||||||||||||    
T  18900015 tatttattacaaaatgttgtcaaatagaggcaatatagcactgttgtgtagcggaatttgaacaaac 18899949  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 647
Target Start/End: Complemental strand, 34036071 - 34036032
Alignment:
Q  608 gtctgttcgaattgacttatttgagcttatctactaacat 647  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  34036071 gtctgtttgaattgacttatttgagcttatctactgacat 34036032  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 618 - 655
Target Start/End: Complemental strand, 8427157 - 8427120
Alignment:
Q  618 attgacttatttgagcttatctactaacatgagtactt 655  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  8427157 attgatttatttgagcttatctactaacataagtactt 8427120  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 647
Target Start/End: Original strand, 19302481 - 19302518
Alignment:
Q  610 ctgttcgaattgacttatttgagcttatctactaacat 647  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  19302481 ctgtttgaattgacttatttgagcttatctactgacat 19302518  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 647
Target Start/End: Complemental strand, 24976032 - 24975991
Alignment:
Q  606 gggtctgttcgaattgacttatttgagcttatctactaacat 647  Q
    ||||||||| | ||||||| ||||||||||||||||||||||    
T  24976032 gggtctgtttggattgactaatttgagcttatctactaacat 24975991  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 38921333 - 38921369
Alignment:
Q  261 ggcgctataatattgttgtgtagcggaatttgaacaa 297  Q
    |||||||||  ||||||||||||||||||||||||||    
T  38921333 ggcgctatagcattgttgtgtagcggaatttgaacaa 38921369  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 607 - 647
Target Start/End: Original strand, 43854956 - 43854996
Alignment:
Q  607 ggtctgttcgaattgacttatttgagcttatctactaacat 647  Q
    |||||||| |||||| ||||||||| |||||||||||||||    
T  43854956 ggtctgtttgaattggcttatttgaacttatctactaacat 43854996  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 9634943 - 9634880
Alignment:
Q  256 atagaggcgctataatattgttgtgtagcggaatttgaacaaacctccatcttctgtaatctgc 319  Q
    |||| |||||||||  | ||||| ||||||||||||||||||||| | || |||||||||||||    
T  9634943 atagcggcgctatagcaatgttgcgtagcggaatttgaacaaaccgctattttctgtaatctgc 9634880  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 606 - 642
Target Start/End: Complemental strand, 14331522 - 14331486
Alignment:
Q  606 gggtctgttcgaattgacttatttgagcttatctact 642  Q
    ||||||||| | |||||||||||||||||||||||||    
T  14331522 gggtctgtttggattgacttatttgagcttatctact 14331486  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 647
Target Start/End: Original strand, 27043744 - 27043785
Alignment:
Q  606 gggtctgttcgaattgacttatttgagcttatctactaacat 647  Q
    ||||||||| | ||||||||||||||||||||||||| ||||    
T  27043744 gggtctgtttggattgacttatttgagcttatctactgacat 27043785  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 643
Target Start/End: Original strand, 39691067 - 39691100
Alignment:
Q  610 ctgttcgaattgacttatttgagcttatctacta 643  Q
    ||||| ||||||||||||||||||||||||||||    
T  39691067 ctgtttgaattgacttatttgagcttatctacta 39691100  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 606 - 642
Target Start/End: Complemental strand, 679447 - 679411
Alignment:
Q  606 gggtctgttcgaattgacttatttgagcttatctact 642  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  679447 gggtctgtttgaattgacttatttgagtttatctact 679411  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 606 - 642
Target Start/End: Complemental strand, 1133084 - 1133048
Alignment:
Q  606 gggtctgttcgaattgacttatttgagcttatctact 642  Q
    |||| |||| |||||||||||||||||||||||||||    
T  1133084 gggtgtgtttgaattgacttatttgagcttatctact 1133048  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 611 - 647
Target Start/End: Original strand, 4449024 - 4449060
Alignment:
Q  611 tgttcgaattgacttatttgagcttatctactaacat 647  Q
    |||| |||||| |||||||||||||||||||||||||    
T  4449024 tgtttgaattgccttatttgagcttatctactaacat 4449060  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 618 - 655
Target Start/End: Complemental strand, 31403503 - 31403466
Alignment:
Q  618 attgacttatttgagcttatctactaacatgagtactt 655  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  31403503 attgacttacttgagcttatctactaacataagtactt 31403466  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 618 - 658
Target Start/End: Original strand, 32205939 - 32205979
Alignment:
Q  618 attgacttatttgagcttatctactaacatgagtacttata 658  Q
    |||||||||||||| ||||||||||| ||| ||||||||||    
T  32205939 attgacttatttgaccttatctactagcataagtacttata 32205979  T

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