View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_high_32 (Length: 279)
Name: NF13789_high_32
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 37791081 - 37791365
Alignment:
| Q |
1 |
gtttattgttagggttaattttgtaataagcttaaaactttagcttcatg----ggtagtattttgagtctatattattgaatatgnnnnnnnnnnnnng |
96 |
Q |
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| T |
37791081 |
gtttattgttagggttaattttgtaataagcttaaaactttagcttcatgcatgggtagtattttgagtctatattattgaatatgtttttcattttttg |
37791180 |
T |
|
| Q |
97 |
tttgataaactctcgatgctgtttgttgttgcatcgtga-------gtatgaaggaagatgttagataataagattatatttataccattgaatcattta |
189 |
Q |
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| T |
37791181 |
tttggcaaattctcgatgctatttgttgttgcatcgtgattcgtgagtataaagggagatgttagataataagattatacttataccattgagccattta |
37791280 |
T |
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| Q |
190 |
tgtttttaagttagtaaaattcattaagttttatatatattctcttgtaaccttttaatattttatgtcatttgatattcttgga |
274 |
Q |
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| T |
37791281 |
tgtttctaagttagtaaaattcattaagttttatatatattctcttgtaaccttttaatatgttatgttatttgatattattgga |
37791365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 24727049 - 24727086
Alignment:
| Q |
209 |
ttcattaagttttatatatattctcttgtaacctttta |
246 |
Q |
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| T |
24727049 |
ttcattatgttttatatatactctcttgtaacctttta |
24727086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 9365156 - 9365123
Alignment:
| Q |
212 |
attaagttttatatatattctcttgtaacctttt |
245 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
9365156 |
attaggttttatatatattctcttgtaacctttt |
9365123 |
T |
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